Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC246680.2-201ENST00000422106 389 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC244035.1-201ENST00000430042 390 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 RPL7L1P9-201ENST00000431298 745 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 GTF2IP7-202ENST00000436677 309 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 CYCSP12-201ENST00000437729 300 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 RPS12P17-201ENST00000438591 377 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.75□□□□□ -1.49
USP39Q53GS9 CNOT7P2-201ENST00000441051 832 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.75□□□□□ -1.49
USP39Q53GS9 NECAP1P2-201ENST00000455668 727 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AL603882.1-201ENST00000463059 681 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC005532.2-201ENST00000467154 373 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC079841.1-201ENST00000481228 950 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 NAA50-206ENST00000493454 964 ntTSL 2 BASIC5.75□□□□□ -1.49
USP39Q53GS9 RPL15P21-201ENST00000495592 567 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC090638.1-201ENST00000498296 909 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.75□□□□□ -1.49
USP39Q53GS9 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.75□□□□□ -1.49
USP39Q53GS9 RFESD-208ENST00000513950 464 ntTSL 5 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC139365.2-201ENST00000517972 253 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
USP39Q53GS9 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC092851.1-201ENST00000535964 478 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AP005205.1-201ENST00000563503 508 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC096996.1-201ENST00000563813 325 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC090616.2-202ENST00000584248 222 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC015688.2-201ENST00000584523 262 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC116651.1-201ENST00000609724 556 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC105227.2-201ENST00000615075 605 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AL158063.1-201ENST00000615349 536 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 U6atac.1-201ENST00000616025 117 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC024595.1-201ENST00000623088 387 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC132068.1-201ENST00000623805 459 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC099654.6-201ENST00000636487 512 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC068137.3-201ENST00000639191 341 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC073869.6-201ENST00000640656 341 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 ZNF663P-202ENST00000641770 1131 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.75□□□□□ -1.49
USP39Q53GS9 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.75□□□□□ -1.49
USP39Q53GS9 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.74□□□□□ -1.49
USP39Q53GS9 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.74□□□□□ -1.49
USP39Q53GS9 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.74□□□□□ -1.49
USP39Q53GS9 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.74□□□□□ -1.49
USP39Q53GS9 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AL133270.1-201ENST00000402635 279 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 ZNF603P-201ENST00000405613 487 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 AL390774.1-201ENST00000411924 246 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 RPL35AP24-201ENST00000413846 330 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AL606490.7-201ENST00000433136 191 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 PTGES3P1-201ENST00000439531 483 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC5.74□□□□□ -1.49
USP39Q53GS9 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 RPS4XP6-201ENST00000477670 797 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 AC004453.1-201ENST00000487895 408 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 RPS27AP16-201ENST00000492222 470 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
USP39Q53GS9 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC5.74□□□□□ -1.49
USP39Q53GS9 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AC016877.3-201ENST00000606778 504 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.74□□□□□ -1.49
USP39Q53GS9 RBM12B-AS1-201ENST00000623283 653 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.74□□□□□ -1.49
USP39Q53GS9 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms