Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC009643.1-201ENST00000532030 391 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 MIR3936-201ENST00000584304 110 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC103792.1-201ENST00000603591 919 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AL359757.1-201ENST00000623176 255 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 FRG1EP-201ENST00000634469 770 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 AC135068.12-201ENST00000637370 931 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 THAP12P5-201ENST00000405864 2275 ntBASIC5.05□□□□□ -1.6
COL28A1Q2UY09 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.05□□□□□ -1.6
COL28A1Q2UY09 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AL645568.2-201ENST00000432815 1337 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RNA5SP455-201ENST00000365190 119 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC234772.1-201ENST00000377927 937 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RNU6-452P-201ENST00000384406 107 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 OR4K12P-201ENST00000406538 961 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 CTSL3P-202ENST00000412179 788 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC105402.1-201ENST00000413336 545 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC069213.2-201ENST00000420238 366 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC023128.2-201ENST00000420880 1223 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 FO393419.3-201ENST00000428741 282 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC022022.1-201ENST00000430304 178 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RPS7P2-201ENST00000435134 607 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AP000936.3-201ENST00000438127 255 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 NUTF2P7-201ENST00000453086 375 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 SEPT7P3-201ENST00000455017 621 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 TVP23BP2-201ENST00000455082 615 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RN7SL188P-201ENST00000469842 285 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RPL21P18-201ENST00000469899 480 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RPL21P129-201ENST00000491732 478 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AP003717.3-201ENST00000544832 1180 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 OR11H3P-201ENST00000554547 982 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 YWHAZP1-201ENST00000556286 722 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 CD24P2-201ENST00000565486 219 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 UBE2FP2-201ENST00000566646 462 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 MIR4675-201ENST00000577898 77 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC090666.1-201ENST00000578241 445 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC074140.1-201ENST00000621617 208 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 CCT8P1-201ENST00000413611 1657 ntBASIC5.04□□□□□ -1.6
COL28A1Q2UY09 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms