Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.5□□□□□ -1.37
LIG3P49916 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 AC073544.1-201ENST00000600110 1595 ntBASIC6.5□□□□□ -1.37
LIG3P49916 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 PPBPP2-201ENST00000513150 1362 ntBASIC6.5□□□□□ -1.37
LIG3P49916 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.5□□□□□ -1.37
LIG3P49916 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 RN7SKP171-201ENST00000364417 303 ntBASIC6.5□□□□□ -1.37
LIG3P49916 RNA5SP77-201ENST00000365394 120 ntBASIC6.5□□□□□ -1.37
LIG3P49916 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC6.5□□□□□ -1.37
LIG3P49916 AL050335.1-201ENST00000396909 869 ntBASIC6.5□□□□□ -1.37
LIG3P49916 RPL23AP29-201ENST00000397284 453 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AL139098.1-201ENST00000407291 389 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC099535.1-201ENST00000408928 371 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.5□□□□□ -1.37
LIG3P49916 AL389915.1-201ENST00000422463 466 ntBASIC6.5□□□□□ -1.37
LIG3P49916 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC6.5□□□□□ -1.37
LIG3P49916 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.5□□□□□ -1.37
LIG3P49916 MTND3P21-201ENST00000433774 331 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AL831737.1-201ENST00000441288 271 ntBASIC6.5□□□□□ -1.37
LIG3P49916 YWHAQP9-201ENST00000445891 512 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC239367.2-201ENST00000447309 705 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AL359385.1-201ENST00000456509 365 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AL445687.2-201ENST00000458156 728 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.5□□□□□ -1.37
LIG3P49916 RN7SL741P-201ENST00000482473 289 ntBASIC6.5□□□□□ -1.37
LIG3P49916 HMGN2P25-201ENST00000486956 268 ntBASIC6.5□□□□□ -1.37
LIG3P49916 RPS27P23-201ENST00000487608 251 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AHI1-208ENST00000488690 712 ntTSL 5 BASIC6.5□□□□□ -1.37
LIG3P49916 PRDX4P1-201ENST00000507189 574 ntBASIC6.5□□□□□ -1.37
LIG3P49916 RNU6-1261P-201ENST00000517194 104 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC6.5□□□□□ -1.37
LIG3P49916 MTND4LP18-201ENST00000526864 291 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AL133399.1-201ENST00000527476 298 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.5□□□□□ -1.37
LIG3P49916 SLC2A13P1-201ENST00000531560 322 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC6.5□□□□□ -1.37
LIG3P49916 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC6.5□□□□□ -1.37
LIG3P49916 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
LIG3P49916 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.5□□□□□ -1.37
LIG3P49916 OR4H6P-201ENST00000563771 921 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC6.5□□□□□ -1.37
LIG3P49916 AC091135.1-201ENST00000585943 307 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC6.5□□□□□ -1.37
LIG3P49916 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC6.5□□□□□ -1.37
LIG3P49916 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC6.5□□□□□ -1.37
LIG3P49916 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.5□□□□□ -1.37
LIG3P49916 AL596327.1-201ENST00000603629 213 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC005084.1-201ENST00000605160 304 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC107214.2-201ENST00000608204 634 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC055764.2-201ENST00000610089 670 ntBASIC6.5□□□□□ -1.37
LIG3P49916 AC090517.2-201ENST00000614966 680 ntBASIC6.5□□□□□ -1.37
LIG3P49916 uc_338.29-201ENST00000615099 168 ntBASIC6.5□□□□□ -1.37
LIG3P49916 LINC02495-203ENST00000636704 242 ntBASIC6.5□□□□□ -1.37
LIG3P49916 OR5H6-203ENST00000642105 978 ntBASIC6.5□□□□□ -1.37
LIG3P49916 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
LIG3P49916 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.5□□□□□ -1.37
LIG3P49916 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
LIG3P49916 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
LIG3P49916 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 AC074141.1-201ENST00000588129 2995 ntBASIC6.5□□□□□ -1.37
LIG3P49916 BX284613.1-201ENST00000452221 1641 ntBASIC6.5□□□□□ -1.37
LIG3P49916 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.5□□□□□ -1.37
LIG3P49916 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 AC022325.1-201ENST00000502748 2199 ntBASIC6.5□□□□□ -1.37
LIG3P49916 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIG3P49916 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.49□□□□□ -1.37
LIG3P49916 MIR133A2-201ENST00000347538 102 ntBASIC6.49□□□□□ -1.37
LIG3P49916 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 RNU5A-6P-201ENST00000384136 116 ntBASIC6.49□□□□□ -1.37
LIG3P49916 SNORD116-23-201ENST00000384645 92 ntBASIC6.49□□□□□ -1.37
LIG3P49916 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
LIG3P49916 AC003045.1-201ENST00000398779 713 ntBASIC6.49□□□□□ -1.37
LIG3P49916 PSMA6P1-201ENST00000400275 741 ntBASIC6.49□□□□□ -1.37
LIG3P49916 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.49□□□□□ -1.37
LIG3P49916 BOLA3P4-201ENST00000418151 400 ntBASIC6.49□□□□□ -1.37
LIG3P49916 Z97055.1-201ENST00000419730 712 ntBASIC6.49□□□□□ -1.37
LIG3P49916 LINC00993-201ENST00000420453 540 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC6.49□□□□□ -1.37
LIG3P49916 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC6.49□□□□□ -1.37
LIG3P49916 AC122718.1-201ENST00000439448 744 ntBASIC6.49□□□□□ -1.37
LIG3P49916 DNAJC19P4-201ENST00000440115 345 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AC007383.1-201ENST00000445875 636 ntBASIC6.49□□□□□ -1.37
LIG3P49916 COX4I1P2-201ENST00000447446 547 ntBASIC6.49□□□□□ -1.37
LIG3P49916 NANOGNBP1-201ENST00000448444 480 ntBASIC6.49□□□□□ -1.37
LIG3P49916 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC6.49□□□□□ -1.37
LIG3P49916 FAM133DP-201ENST00000464802 691 ntBASIC6.49□□□□□ -1.37
LIG3P49916 RPL31P58-201ENST00000469001 379 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AC096741.1-201ENST00000472250 846 ntBASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms