Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 RN7SKP147-201ENST00000517154 244 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 OR7E128P-201ENST00000532736 1024 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 PCNPP1-201ENST00000552501 511 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC074029.1-201ENST00000552531 1044 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC025918.2-201ENST00000558683 763 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC093799.2-201ENST00000610062 578 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 LINC00901.1-201ENST00000617252 152 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC000123.2-201ENST00000623124 461 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC016717.3-201ENST00000624730 554 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.59□□□□□ -1.36
CHMP4AQ9BY43 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC6.59□□□□□ -1.36
CHMP4AQ9BY43 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 SNORA5.1-201ENST00000384275 131 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AL645733.1-201ENST00000402250 217 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 MTND2P15-201ENST00000418575 892 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 GAPDHP49-201ENST00000421421 961 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 OR7E125P-201ENST00000443450 846 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AL645937.3-201ENST00000453647 936 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AL049874.2-201ENST00000492636 288 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AC231760.1-201ENST00000498002 260 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AC004980.4-201ENST00000513375 203 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 RNA5SP360-201ENST00000516555 118 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 MIR4443-201ENST00000585052 53 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AC011487.3-201ENST00000593607 453 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AL392112.1-201ENST00000605115 829 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AC005084.1-201ENST00000605160 304 ntBASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
CHMP4AQ9BY43 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 NAP1L4P1-201ENST00000319092 1157 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AL390316.1-201ENST00000406279 553 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 MTND4LP7-201ENST00000431728 294 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC073648.4-201ENST00000442655 781 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 RPS27P5-201ENST00000444247 244 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC090312.2-201ENST00000582687 378 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC010503.3-201ENST00000594355 540 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC018695.5-201ENST00000605872 315 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 MIR6730-201ENST00000622213 67 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 AC091905.4-201ENST00000623432 202 ntBASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CHMP4AQ9BY43 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 GHR-202ENST00000357703 4316 ntTSL 5 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 RNU4-4P-201ENST00000364588 130 ntBASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms