Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.04□□□□□ -1.76
CHD3Q12873 AC093227.2-201ENST00000589357 285 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.04□□□□□ -1.76
CHD3Q12873 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.04□□□□□ -1.76
CHD3Q12873 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.04□□□□□ -1.76
CHD3Q12873 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
CHD3Q12873 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 CCT8P1-201ENST00000413611 1657 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 LINC01355-201ENST00000566551 5444 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 RNA5SP28-201ENST00000363841 119 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 RNA5SP171-201ENST00000391071 115 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 MIR298-201ENST00000401212 88 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AL136116.2-201ENST00000404020 785 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.04□□□□□ -1.76
CHD3Q12873 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.04□□□□□ -1.76
CHD3Q12873 Z95327.1-201ENST00000446082 482 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.04□□□□□ -1.76
CHD3Q12873 SOX5P1-201ENST00000524155 1127 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.04□□□□□ -1.76
CHD3Q12873 MIR4429-201ENST00000580105 73 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.04□□□□□ -1.76
CHD3Q12873 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 AC093908.1-201ENST00000623125 8092 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 AC120338.1-201ENST00000625074 1541 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.03□□□□□ -1.76
CHD3Q12873 SNORA37-201ENST00000384504 129 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CHD3Q12873 U3.35-201ENST00000408405 208 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 RNA5SP44-201ENST00000410446 133 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.03□□□□□ -1.76
CHD3Q12873 AC022795.1-201ENST00000473808 480 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.03□□□□□ -1.76
CHD3Q12873 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.03□□□□□ -1.76
CHD3Q12873 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.03□□□□□ -1.76
CHD3Q12873 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.03□□□□□ -1.76
CHD3Q12873 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.03□□□□□ -1.76
CHD3Q12873 AC034105.4-201ENST00000568304 277 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 AC008782.1-201ENST00000603386 430 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CHD3Q12873 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
CHD3Q12873 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.03□□□□□ -1.76
CHD3Q12873 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 AC018529.3-201ENST00000624212 2254 ntBASIC4.03□□□□□ -1.76
CHD3Q12873 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.03□□□□□ -1.76
CHD3Q12873 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
CHD3Q12873 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
CHD3Q12873 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.03□□□□□ -1.77
CHD3Q12873 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.02□□□□□ -1.77
CHD3Q12873 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 OR4K17-201ENST00000315543 1032 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.02□□□□□ -1.77
CHD3Q12873 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
CHD3Q12873 OR1F12-201ENST00000402365 945 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.02□□□□□ -1.77
CHD3Q12873 CYCSP10-201ENST00000417973 294 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 MTCO1P35-201ENST00000515270 228 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 RN7SL652P-201ENST00000577769 300 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 RPL12P25-202ENST00000598100 674 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 AC115286.1-201ENST00000604298 434 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.02□□□□□ -1.77
CHD3Q12873 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.02□□□□□ -1.77
CHD3Q12873 AL122126.1-201ENST00000546905 1318 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CHD3Q12873 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.02□□□□□ -1.77
CHD3Q12873 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.02□□□□□ -1.77
CHD3Q12873 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
CHD3Q12873 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CHD3Q12873 ZFRP1-201ENST00000457579 2970 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.02□□□□□ -1.77
CHD3Q12873 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.02□□□□□ -1.77
CHD3Q12873 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.02□□□□□ -1.77
CHD3Q12873 RPL21P108-201ENST00000413857 481 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 TMBIM7P-201ENST00000418074 855 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 AF186996.5-201ENST00000418098 904 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms