Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
PKNOX1P55347 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
PKNOX1P55347 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.47□□□□□ -1.69
PKNOX1P55347 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
PKNOX1P55347 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
PKNOX1P55347 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PKNOX1P55347 AL391684.1-202ENST00000641293 1636 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.47□□□□□ -1.69
PKNOX1P55347 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
PKNOX1P55347 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.47□□□□□ -1.69
PKNOX1P55347 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.47□□□□□ -1.69
PKNOX1P55347 RPS24P12-201ENST00000402084 394 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 FCF1P5-201ENST00000406490 482 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 RNU4-34P-201ENST00000410431 124 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 TRIM60P17-201ENST00000415181 719 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC007064.3-201ENST00000422608 359 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.47□□□□□ -1.69
PKNOX1P55347 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AL392003.1-201ENST00000434394 243 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.47□□□□□ -1.69
PKNOX1P55347 RPL36AP41-201ENST00000493820 306 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.47□□□□□ -1.69
PKNOX1P55347 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.47□□□□□ -1.69
PKNOX1P55347 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.47□□□□□ -1.69
PKNOX1P55347 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AL049874.4-201ENST00000557593 255 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC105129.1-201ENST00000560250 297 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
PKNOX1P55347 AP005119.2-201ENST00000579735 1105 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.47□□□□□ -1.69
PKNOX1P55347 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC008759.1-201ENST00000589783 983 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.47□□□□□ -1.69
PKNOX1P55347 AC012213.4-201ENST00000606457 354 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 AC004241.3-201ENST00000611728 517 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 MIR6886-201ENST00000619864 61 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 MIR7154-201ENST00000620673 73 ntBASIC4.47□□□□□ -1.69
PKNOX1P55347 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.47□□□□□ -1.69
PKNOX1P55347 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PKNOX1P55347 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PKNOX1P55347 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PKNOX1P55347 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
PKNOX1P55347 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.46□□□□□ -1.69
PKNOX1P55347 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PKNOX1P55347 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.46□□□□□ -1.7
PKNOX1P55347 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PKNOX1P55347 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PKNOX1P55347 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PKNOX1P55347 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PKNOX1P55347 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PKNOX1P55347 SNORA51.1-201ENST00000363243 140 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 RNU6-670P-201ENST00000364312 104 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 RNA5SP151-201ENST00000365632 117 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
PKNOX1P55347 RNA5SP113-201ENST00000410486 84 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 RSU1P3-201ENST00000412878 835 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PKNOX1P55347 COX6B1P1-201ENST00000415962 213 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 BX510359.2-201ENST00000417920 305 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AC004690.1-201ENST00000418216 328 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 MTND4LP13-201ENST00000425022 298 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.46□□□□□ -1.7
PKNOX1P55347 RPL23AP25-201ENST00000430973 463 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 Z85994.2-201ENST00000434327 452 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.46□□□□□ -1.7
PKNOX1P55347 AC117394.1-201ENST00000477323 567 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AC004815.1-201ENST00000484185 331 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.46□□□□□ -1.7
PKNOX1P55347 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.46□□□□□ -1.7
PKNOX1P55347 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.46□□□□□ -1.7
PKNOX1P55347 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.46□□□□□ -1.7
PKNOX1P55347 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 OR5AZ1P-201ENST00000527448 943 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.46□□□□□ -1.7
PKNOX1P55347 AP001880.2-201ENST00000538233 448 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.46□□□□□ -1.7
PKNOX1P55347 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.46□□□□□ -1.7
PKNOX1P55347 AL110118.1-201ENST00000553543 400 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.46□□□□□ -1.7
PKNOX1P55347 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.46□□□□□ -1.7
PKNOX1P55347 MTND6P33-201ENST00000571794 183 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AC027281.1-201ENST00000574178 758 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 ADAD1P2-201ENST00000588476 646 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.46□□□□□ -1.7
PKNOX1P55347 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.46□□□□□ -1.7
PKNOX1P55347 BNIP3P32-201ENST00000600015 554 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AL590410.1-201ENST00000617925 333 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AC009704.2-201ENST00000618739 483 ntBASIC4.46□□□□□ -1.7
PKNOX1P55347 AC091905.2-201ENST00000623143 306 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms