Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL4A4P53420 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.74□□□□□ -1.65
COL4A4P53420 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL4A4P53420 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL4A4P53420 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL4A4P53420 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
COL4A4P53420 RNU1-132P-201ENST00000364300 164 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.74□□□□□ -1.65
COL4A4P53420 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.74□□□□□ -1.65
COL4A4P53420 AL117339.2-201ENST00000430475 180 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 AL356276.2-201ENST00000435919 558 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 AL162151.2-201ENST00000448875 158 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 RPL23AP2-201ENST00000471227 466 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 RPL23AP37-201ENST00000479658 549 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 MORF4L2P1-201ENST00000503761 858 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.74□□□□□ -1.65
COL4A4P53420 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC4.74□□□□□ -1.65
COL4A4P53420 BPIFA4P-203ENST00000603168 689 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 uc_338.13-201ENST00000618243 179 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.74□□□□□ -1.65
COL4A4P53420 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.74□□□□□ -1.65
COL4A4P53420 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL4A4P53420 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL4A4P53420 AC104260.2-201ENST00000623551 3497 ntBASIC4.74□□□□□ -1.65
COL4A4P53420 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.74□□□□□ -1.65
COL4A4P53420 Y_RNA.333-201ENST00000365274 102 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 RNU1-63P-201ENST00000383902 164 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 AL035696.2-201ENST00000407941 709 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 YME1L1P1-201ENST00000429435 297 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 AL031584.1-201ENST00000447169 754 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 SNORA59A-201ENST00000459326 152 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 ATP5G1P3-201ENST00000463301 410 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 DEFB109F-201ENST00000491870 277 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.73□□□□□ -1.65
COL4A4P53420 GTF2IP22-201ENST00000554443 182 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 AC005520.3-201ENST00000602874 370 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 AL353726.1-201ENST00000614041 1000 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.73□□□□□ -1.65
COL4A4P53420 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
COL4A4P53420 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC4.73□□□□□ -1.65
COL4A4P53420 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.73□□□□□ -1.65
COL4A4P53420 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
COL4A4P53420 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.73□□□□□ -1.65
COL4A4P53420 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
COL4A4P53420 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL4A4P53420 U3.23-201ENST00000391132 200 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 AC097374.1-203ENST00000400783 485 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.73□□□□□ -1.65
COL4A4P53420 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.73□□□□□ -1.65
COL4A4P53420 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.73□□□□□ -1.65
COL4A4P53420 GOT2P5-201ENST00000433995 546 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.73□□□□□ -1.65
COL4A4P53420 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.73□□□□□ -1.65
COL4A4P53420 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.73□□□□□ -1.65
COL4A4P53420 AC098799.1-201ENST00000504752 800 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 FTH1P21-201ENST00000512179 511 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.73□□□□□ -1.65
COL4A4P53420 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.73□□□□□ -1.65
COL4A4P53420 TRMT10BP1-201ENST00000519377 943 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.73□□□□□ -1.65
COL4A4P53420 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
COL4A4P53420 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.73□□□□□ -1.65
COL4A4P53420 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.73□□□□□ -1.65
COL4A4P53420 AP000641.1-201ENST00000531988 1639 ntBASIC4.72□□□□□ -1.65
COL4A4P53420 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.72□□□□□ -1.65
COL4A4P53420 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
COL4A4P53420 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
COL4A4P53420 AC027228.2-201ENST00000567141 2154 ntBASIC4.72□□□□□ -1.65
COL4A4P53420 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC4.72□□□□□ -1.65
COL4A4P53420 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
COL4A4P53420 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
COL4A4P53420 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.72□□□□□ -1.65
COL4A4P53420 RNA5SP372-201ENST00000390836 115 ntBASIC4.72□□□□□ -1.65
COL4A4P53420 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.72□□□□□ -1.65
COL4A4P53420 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.72□□□□□ -1.65
COL4A4P53420 AL139095.3-201ENST00000419672 1203 ntBASIC4.72□□□□□ -1.65
COL4A4P53420 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 AL133372.1-201ENST00000493565 745 ntBASIC4.72□□□□□ -1.65
COL4A4P53420 RPS4XP18-201ENST00000495480 763 ntBASIC4.72□□□□□ -1.65
COL4A4P53420 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.72□□□□□ -1.65
COL4A4P53420 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms