Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
MSX2P35548 Y_RNA.88-201ENST00000363029 99 ntBASIC5.51□□□□□ -1.53
MSX2P35548 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 RNU1-136P-201ENST00000384181 164 ntBASIC5.51□□□□□ -1.53
MSX2P35548 MIR191-201ENST00000384873 92 ntBASIC5.51□□□□□ -1.53
MSX2P35548 ARSFP1-201ENST00000398758 477 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 RPL7P8-201ENST00000411964 730 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AL161449.1-201ENST00000414531 1199 ntBASIC5.51□□□□□ -1.53
MSX2P35548 MTCYBP38-201ENST00000417160 1123 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AL513325.1-201ENST00000417716 1034 ntBASIC5.51□□□□□ -1.53
MSX2P35548 RPS7P8-201ENST00000418311 581 ntBASIC5.51□□□□□ -1.53
MSX2P35548 RPL35AP31-201ENST00000418340 337 ntBASIC5.51□□□□□ -1.53
MSX2P35548 EIF1P1-201ENST00000421436 341 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AL139415.2-201ENST00000431968 163 ntBASIC5.51□□□□□ -1.53
MSX2P35548 DEFA9P-201ENST00000433042 285 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX2P35548 AC092170.1-201ENST00000440211 356 ntBASIC5.51□□□□□ -1.53
MSX2P35548 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 RPS7P3-201ENST00000443360 580 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX2P35548 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 TPT1P7-201ENST00000458300 517 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AC008629.2-201ENST00000503783 483 ntBASIC5.51□□□□□ -1.53
MSX2P35548 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 AC147055.4-201ENST00000504399 745 ntBASIC5.51□□□□□ -1.53
MSX2P35548 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 HMGB3P13-201ENST00000511263 607 ntBASIC5.51□□□□□ -1.53
MSX2P35548 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.51□□□□□ -1.53
MSX2P35548 RNU6-405P-201ENST00000516637 110 ntBASIC5.51□□□□□ -1.53
MSX2P35548 RNU6-678P-201ENST00000516832 109 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 AP001317.1-201ENST00000531194 960 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC5.51□□□□□ -1.53
MSX2P35548 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.51□□□□□ -1.53
MSX2P35548 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX2P35548 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 AC037479.1-201ENST00000558361 625 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 RBM22P12-201ENST00000567098 1255 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AC012435.1-202ENST00000568772 240 ntBASIC5.51□□□□□ -1.53
MSX2P35548 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC5.51□□□□□ -1.53
MSX2P35548 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.51□□□□□ -1.53
MSX2P35548 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 BNIP3P26-201ENST00000600827 554 ntBASIC5.51□□□□□ -1.53
MSX2P35548 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC5.51□□□□□ -1.53
MSX2P35548 SMIM12P1-201ENST00000603004 274 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 AC012557.1-201ENST00000607115 611 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AC080013.4-201ENST00000607624 649 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 AL359314.1-201ENST00000616913 261 ntBASIC5.51□□□□□ -1.53
MSX2P35548 AL445670.1-201ENST00000618889 801 ntBASIC5.51□□□□□ -1.53
MSX2P35548 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 AC073869.7-201ENST00000640874 297 ntBASIC5.51□□□□□ -1.53
MSX2P35548 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
MSX2P35548 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
MSX2P35548 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX2P35548 MT-RNR2-201ENST00000387347 1559 ntBASIC5.5□□□□□ -1.53
MSX2P35548 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 AC097063.1-201ENST00000426714 1797 ntBASIC5.5□□□□□ -1.53
MSX2P35548 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX2P35548 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
MSX2P35548 RNU6-500P-201ENST00000362349 107 ntBASIC5.5□□□□□ -1.53
MSX2P35548 RNA5SP110-201ENST00000362638 115 ntBASIC5.5□□□□□ -1.53
MSX2P35548 Y_RNA.248-201ENST00000364501 109 ntBASIC5.5□□□□□ -1.53
MSX2P35548 RNU6-707P-201ENST00000364647 95 ntBASIC5.5□□□□□ -1.53
MSX2P35548 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 OR1L1-202ENST00000373686 1083 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms