Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC010300.1-201ENST00000600671 5134 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 IL6STP1-201ENST00000346911 1020 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HOXD4P09016 ATP5HP3-201ENST00000396994 486 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AL356967.1-201ENST00000406305 431 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 RNA5SP146-201ENST00000410743 123 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AL357078.2-201ENST00000416486 427 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AL445528.1-201ENST00000426330 420 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 RPL7P11-201ENST00000437586 658 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC073264.2-201ENST00000448886 166 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 TPT1P12-201ENST00000448968 492 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXD4P09016 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXD4P09016 AC063943.1-201ENST00000465434 453 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AL672167.3-201ENST00000465951 960 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 RN7SL385P-201ENST00000468873 276 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC105918.1-201ENST00000474399 838 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC022336.1-201ENST00000475510 337 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXD4P09016 PRELID3BP5-201ENST00000508612 460 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXD4P09016 AC021146.3-201ENST00000511911 260 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 ENPP7P9-201ENST00000514456 627 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC112206.4-201ENST00000515142 405 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 AP006289.1-201ENST00000538089 277 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXD4P09016 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXD4P09016 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXD4P09016 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXD4P09016 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HOXD4P09016 AC091042.1-201ENST00000579213 173 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 MIR3667-201ENST00000581025 74 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXD4P09016 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 AL158211.2-201ENST00000607282 395 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AP005432.2-201ENST00000608162 586 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 AC016542.1-201ENST00000608259 493 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HOXD4P09016 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXD4P09016 A2MP1-204ENST00000566278 4130 ntBASIC4.48□□□□□ -1.69
HOXD4P09016 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HOXD4P09016 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 AC099654.2-201ENST00000433031 1980 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
HOXD4P09016 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
HOXD4P09016 OR52B1P-201ENST00000316506 909 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 UBE2V1P15-201ENST00000407776 448 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXD4P09016 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 AC092570.3-201ENST00000420113 693 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 EIF4A1P1-201ENST00000420241 934 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXD4P09016 GTF2IP2-201ENST00000424290 697 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXD4P09016 AC068287.1-201ENST00000430283 295 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXD4P09016 RPS29P9-201ENST00000440360 171 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXD4P09016 RPL23AP37-201ENST00000479658 549 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 RNU6-760P-201ENST00000516078 97 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AF186190.1-201ENST00000517470 480 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXD4P09016 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXD4P09016 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXD4P09016 AL512310.9-201ENST00000553311 948 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 LINC00557-201ENST00000563184 1279 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXD4P09016 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXD4P09016 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXD4P09016 AC040174.2-201ENST00000602701 465 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AC133552.5-201ENST00000604266 540 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AC005377.1-201ENST00000605126 456 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AL512506.1-201ENST00000613918 449 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 BX005214.3-202ENST00000619809 325 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AP001005.3-201ENST00000622049 129 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXD4P09016 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXD4P09016 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXD4P09016 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
HOXD4P09016 AC068254.2-201ENST00000623938 3577 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXD4P09016 AC006971.1-201ENST00000407916 4486 ntBASIC4.47□□□□□ -1.69
HOXD4P09016 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXD4P09016 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXD4P09016 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms