Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 EI24P3-201ENST00000399046 1062 ntBASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 AL590806.1-201ENST00000415818 853 ntBASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 UBE2V1P3-201ENST00000439651 417 ntBASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 AL157385.1-201ENST00000446973 268 ntBASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 AC087499.8-201ENST00000578406 226 ntBASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 AC127024.5-201ENST00000580085 462 ntBASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 AL031658.2-201ENST00000616850 651 ntBASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 RNA5SP130-201ENST00000364431 114 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 RNA5SP36-201ENST00000410197 133 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 RPS20P14-201ENST00000412545 360 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 AC012671.1-201ENST00000451912 203 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 RNA5SP446-201ENST00000515955 82 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 SNORA70.24-201ENST00000517233 118 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 GTF2IP22-201ENST00000554443 182 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 AP002360.3-201ENST00000607673 710 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 FAM27D1-201ENST00000612308 341 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 AP001153.1-201ENST00000641024 338 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 AP001002.1-201ENST00000625148 1513 ntBASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHANK3Q9BYB0 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 OR7E10P-201ENST00000526420 991 ntBASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 AC120036.2-201ENST00000509729 1474 ntBASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHANK3Q9BYB0 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC068533.1-201ENST00000418542 415 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 TBCAP1-201ENST00000436520 327 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 CYCSP43-201ENST00000438233 310 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AL157884.3-201ENST00000448273 1184 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 PPP1R11P1-201ENST00000486095 376 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 RNA5SP73-201ENST00000516744 108 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 ADAD1P2-201ENST00000588476 646 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms