Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AL606537.1-201ENST00000607258 2011 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 RNA5SP388-201ENST00000362584 119 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 RNU6-481P-201ENST00000384194 107 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 RNU6-185P-201ENST00000384421 107 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 RNU6-1005P-201ENST00000384519 107 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 MIR320B1-201ENST00000390209 79 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 HMGB1P13-201ENST00000406019 642 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 HYALP1-201ENST00000417674 1279 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 DPY19L1P2-201ENST00000426647 915 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 ELOCP6-201ENST00000429066 328 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 TRBV26OR9-2-201ENST00000432077 293 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 MTCO1P52-201ENST00000433928 531 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 KCTD10P1-201ENST00000434203 625 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 YWHAZP2-201ENST00000440317 728 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 RPL10P17-201ENST00000453852 316 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 ELOCP12-201ENST00000458706 328 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 IMPA1P1-201ENST00000510718 842 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 MIR5096-201ENST00000583713 70 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 H3F3BP2-201ENST00000583907 357 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 RMST_10.1-201ENST00000616309 154 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC007342.8-201ENST00000623278 678 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AC004808.1-201ENST00000627671 721 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AL445984.1-201ENST00000637834 659 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 AL138820.1-201ENST00000617901 5305 ntBASIC5.08□□□□□ -1.6
COL28A1Q2UY09 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 METTL21EP-201ENST00000298105 713 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 SNURFL-201ENST00000309296 343 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 RNU6-244P-201ENST00000391028 104 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 UBE2V1P9-201ENST00000414760 368 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC097499.1-201ENST00000444277 208 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 CDC27P1-201ENST00000445384 715 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC092647.2-201ENST00000452998 253 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL513533.1-201ENST00000453728 415 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 SCARNA16.4-201ENST00000516956 187 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC021006.3-201ENST00000530771 192 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 OR5AM1P-201ENST00000532136 1032 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC087894.1-201ENST00000538359 518 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC008033.2-201ENST00000542626 177 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC008083.2-201ENST00000546707 476 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL049830.4-201ENST00000555149 351 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 NMNAT1P5-201ENST00000559657 841 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 MIR4472-2-201ENST00000582069 67 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AP005262.1-201ENST00000582646 997 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC245884.10-201ENST00000597355 337 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL590392.1-201ENST00000604960 446 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL158050.2-201ENST00000605336 568 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL161637.1-201ENST00000622380 412 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC112694.2-201ENST00000623697 768 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AC068724.3-201ENST00000625906 87 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 AL356118.1-201ENST00000635272 1078 ntBASIC5.07□□□□□ -1.6
COL28A1Q2UY09 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC5.07□□□□□ -1.6
COL28A1Q2UY09 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms