Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
CLDN3O15551 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 AC108467.2-201ENST00000617640 1597 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 TCP1P3-201ENST00000414406 1498 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 AC026523.2-201ENST00000625039 7739 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
CLDN3O15551 RN7SKP115-201ENST00000363177 317 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 SNORD113.2-201ENST00000364166 89 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 RNA5SP505-201ENST00000364748 108 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 RNA5SP397-201ENST00000391323 118 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 RPS4XP9-201ENST00000405151 780 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CLDN3O15551 RPL26P29-201ENST00000415623 438 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.08□□□□□ -1.6
CLDN3O15551 AC092570.3-201ENST00000420113 693 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 HSPE1P16-201ENST00000426640 348 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AC011753.3-201ENST00000443436 406 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AC104651.2-201ENST00000447549 528 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 RPS29P33-201ENST00000456717 146 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.08□□□□□ -1.6
CLDN3O15551 AC098799.3-201ENST00000506095 438 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.08□□□□□ -1.6
CLDN3O15551 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC5.08□□□□□ -1.6
CLDN3O15551 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.08□□□□□ -1.6
CLDN3O15551 OR5AN2P-201ENST00000534535 896 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.08□□□□□ -1.6
CLDN3O15551 EIF1AXP2-201ENST00000555940 413 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AC093591.2-201ENST00000565254 3843 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.08□□□□□ -1.6
CLDN3O15551 DPRXP4-201ENST00000578053 568 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AL137072.1-201ENST00000603444 466 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 BNIP3P41-202ENST00000616656 861 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AL133370.2-201ENST00000619934 439 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 AC004232.3-201ENST00000622977 525 ntBASIC5.08□□□□□ -1.6
CLDN3O15551 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.08□□□□□ -1.6
CLDN3O15551 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CLDN3O15551 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.07□□□□□ -1.6
CLDN3O15551 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CLDN3O15551 DHX40P1-201ENST00000588725 1412 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.07□□□□□ -1.6
CLDN3O15551 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 OR4K15-201ENST00000305051 1216 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 BMS1P3-201ENST00000372011 932 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 AL080315.1-201ENST00000406055 466 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.07□□□□□ -1.6
CLDN3O15551 AC007064.3-201ENST00000422608 359 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 AC245028.1-201ENST00000423259 256 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.07□□□□□ -1.6
CLDN3O15551 CEACAMP9-201ENST00000442990 513 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.07□□□□□ -1.6
CLDN3O15551 BUD31P2-201ENST00000449374 300 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 CCRL1P1-201ENST00000449542 1053 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 CYCSP34-201ENST00000458172 304 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.07□□□□□ -1.6
CLDN3O15551 RN7SL738P-201ENST00000470264 297 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 AC037198.2-201ENST00000478845 733 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 LARP7P4-201ENST00000481075 878 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 MTND4LP2-201ENST00000502312 285 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.07□□□□□ -1.6
CLDN3O15551 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.07□□□□□ -1.6
CLDN3O15551 RNA5SP228-201ENST00000516232 133 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.07□□□□□ -1.6
CLDN3O15551 MIR4330-201ENST00000579077 105 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.07□□□□□ -1.6
CLDN3O15551 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.07□□□□□ -1.6
CLDN3O15551 AP001542.1-201ENST00000591314 200 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 AC234771.5-201ENST00000600161 514 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 AL133338.2-201ENST00000604292 736 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.07□□□□□ -1.6
CLDN3O15551 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CLDN3O15551 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.07□□□□□ -1.6
CLDN3O15551 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CLDN3O15551 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
CLDN3O15551 DHX9P1-201ENST00000436565 3076 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.07□□□□□ -1.6
CLDN3O15551 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLDN3O15551 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
CLDN3O15551 MFSD8-216ENST00000641147 4009 ntBASIC5.07□□□□□ -1.6
CLDN3O15551 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CLDN3O15551 AL133268.1-201ENST00000405676 1401 ntBASIC5.06□□□□□ -1.6
CLDN3O15551 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.06□□□□□ -1.6
CLDN3O15551 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms