Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Syne4Q8CII8 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Syne4Q8CII8 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Syne4Q8CII8 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC18.86■□□□□ 0.61
Syne4Q8CII8 Gm12260-201ENSMUST00000122447 411 ntBASIC18.86■□□□□ 0.61
Syne4Q8CII8 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Syne4Q8CII8 Gm42670-201ENSMUST00000201816 1292 ntBASIC18.86■□□□□ 0.61
Syne4Q8CII8 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Syne4Q8CII8 CT943659.1-201ENSMUST00000215459 326 ntBASIC18.86■□□□□ 0.61
Syne4Q8CII8 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC18.86■□□□□ 0.61
Syne4Q8CII8 Gm15590-201ENSMUST00000078419 552 ntBASIC18.86■□□□□ 0.61
Syne4Q8CII8 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Syne4Q8CII8 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Syne4Q8CII8 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Syne4Q8CII8 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Syne4Q8CII8 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Syne4Q8CII8 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.86■□□□□ 0.61
Syne4Q8CII8 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Syne4Q8CII8 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.84■□□□□ 0.61
Syne4Q8CII8 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC18.84■□□□□ 0.61
Syne4Q8CII8 AC114585.2-202ENSMUST00000228094 426 ntBASIC18.84■□□□□ 0.61
Syne4Q8CII8 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Syne4Q8CII8 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Syne4Q8CII8 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Syne4Q8CII8 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Syne4Q8CII8 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Syne4Q8CII8 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Syne4Q8CII8 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Syne4Q8CII8 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Syne4Q8CII8 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Syne4Q8CII8 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Syne4Q8CII8 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Syne4Q8CII8 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Syne4Q8CII8 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.83■□□□□ 0.6
Syne4Q8CII8 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.83■□□□□ 0.6
Syne4Q8CII8 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.82■□□□□ 0.6
Syne4Q8CII8 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC18.82■□□□□ 0.6
Syne4Q8CII8 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 AC154222.1-201ENSMUST00000223882 475 ntBASIC18.82■□□□□ 0.6
Syne4Q8CII8 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Syne4Q8CII8 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms