Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Actl10-202ENSMUST00000226583 1501 ntBASIC16.44■□□□□ 0.22
Ubp1Q811S7 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ubp1Q811S7 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Mir1668-201ENSMUST00000184114 107 ntBASIC16.43■□□□□ 0.22
Ubp1Q811S7 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Gm18101-201ENSMUST00000215769 548 ntBASIC16.43■□□□□ 0.22
Ubp1Q811S7 Gm18032-201ENSMUST00000222541 538 ntBASIC16.43■□□□□ 0.22
Ubp1Q811S7 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ubp1Q811S7 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubp1Q811S7 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.41■□□□□ 0.22
Ubp1Q811S7 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubp1Q811S7 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubp1Q811S7 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubp1Q811S7 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubp1Q811S7 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubp1Q811S7 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ubp1Q811S7 Gm26039-201ENSMUST00000158152 144 ntBASIC16.4■□□□□ 0.22
Ubp1Q811S7 Gm27389-201ENSMUST00000183622 195 ntBASIC16.4■□□□□ 0.22
Ubp1Q811S7 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC16.4■□□□□ 0.22
Ubp1Q811S7 Gm21559-201ENSMUST00000220638 855 ntBASIC16.4■□□□□ 0.22
Ubp1Q811S7 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubp1Q811S7 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubp1Q811S7 Gm8587-201ENSMUST00000076538 843 ntBASIC16.4■□□□□ 0.22
Ubp1Q811S7 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubp1Q811S7 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms