Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp49Q6P9L4 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp49Q6P9L4 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.68■□□□□ 0.58
Usp49Q6P9L4 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp49Q6P9L4 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC18.66■□□□□ 0.58
Usp49Q6P9L4 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Gm16061-201ENSMUST00000122167 857 ntBASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Gm7213-201ENSMUST00000215977 950 ntBASIC18.65■□□□□ 0.58
Usp49Q6P9L4 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms