Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Gm10418-201ENSMUST00000100943 576 ntBASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sh3rf1Q69ZI1 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sh3rf1Q69ZI1 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf1Q69ZI1 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Sh3rf1Q69ZI1 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Sh3rf1Q69ZI1 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Sh3rf1Q69ZI1 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
Sh3rf1Q69ZI1 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Gm10654-201ENSMUST00000098653 1633 ntBASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf1Q69ZI1 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 499 ms