Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Gm29707-201ENSMUST00000196325 491 ntBASIC16.3■□□□□ 0.2
Chd3B1AR17 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
Chd3B1AR17 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Chd3B1AR17 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Chd3B1AR17 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.29■□□□□ 0.2
Chd3B1AR17 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd3B1AR17 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Chd3B1AR17 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC16.28■□□□□ 0.2
Chd3B1AR17 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Chd3B1AR17 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Chd3B1AR17 Gm36858-201ENSMUST00000194501 2391 ntBASIC16.28■□□□□ 0.2
Chd3B1AR17 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.28■□□□□ 0.2
Chd3B1AR17 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
Chd3B1AR17 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd3B1AR17 Dapk1-207ENSMUST00000226059 5009 ntBASIC16.28■□□□□ 0.2
Chd3B1AR17 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Chd3B1AR17 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Chd3B1AR17 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Chd3B1AR17 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC16.27■□□□□ 0.2
Chd3B1AR17 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.27■□□□□ 0.2
Chd3B1AR17 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Chd3B1AR17 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chd3B1AR17 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Chd3B1AR17 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chd3B1AR17 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chd3B1AR17 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.27■□□□□ 0.19
Chd3B1AR17 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Chd3B1AR17 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Chd3B1AR17 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chd3B1AR17 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.19
Chd3B1AR17 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Chd3B1AR17 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Slc35b2-202ENSMUST00000223987 1766 ntBASIC16.26■□□□□ 0.19
Chd3B1AR17 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
Chd3B1AR17 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Chd3B1AR17 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
Chd3B1AR17 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Rprl3-201ENSMUST00000157400 290 ntBASIC16.26■□□□□ 0.19
Chd3B1AR17 Mir3081-201ENSMUST00000175305 84 ntBASIC16.26■□□□□ 0.19
Chd3B1AR17 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Chd3B1AR17 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.26■□□□□ 0.19
Chd3B1AR17 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.26■□□□□ 0.19
Chd3B1AR17 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Chd3B1AR17 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms