Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL356981.1-201ENST00000454879 684 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 RPL21P6-201ENST00000479171 504 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AC012339.2-201ENST00000523996 453 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AC136624.4-201ENST00000573044 370 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AL391834.1-201ENST00000609609 560 ntBASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HDDC3Q8N4P3 AL603750.1-201ENST00000624216 1717 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 SAMMSON-226ENST00000642089 1582 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 PHACTR2P1-201ENST00000605639 1414 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 RNU6-666P-201ENST00000363499 107 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 AL049693.1-201ENST00000402760 611 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 OR6C64P-201ENST00000419708 825 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 AC007559.1-201ENST00000428736 355 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 CNOT7P1-201ENST00000429006 852 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 MTCO1P57-201ENST00000432182 261 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 AC092013.1-201ENST00000438795 332 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 MTND6P18-201ENST00000439477 513 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 Z99127.2-201ENST00000441426 334 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 GAPDHP14-201ENST00000450472 937 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 CYCSP42-201ENST00000450823 238 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 RNU7-27P-201ENST00000459281 62 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 RNU6-775P-201ENST00000459318 96 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 AC026979.1-201ENST00000492525 396 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 RNA5SP230-201ENST00000517039 122 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 RN7SKP92-201ENST00000517266 244 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 HIGD1AP18-201ENST00000520730 278 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 MORF4L1P3-201ENST00000525966 950 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 NDUFB4P11-201ENST00000560510 395 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 TVP23CP2-201ENST00000571473 623 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 DPRXP4-201ENST00000578053 568 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 AC022884.2-201ENST00000578535 580 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 MIR7703-201ENST00000620784 77 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5□□□□□ -1.61
HDDC3Q8N4P3 AC010329.2-201ENST00000595195 2737 ntBASIC5□□□□□ -1.61
HDDC3Q8N4P3 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
HDDC3Q8N4P3 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 AC005332.5-201ENST00000591222 2919 ntBASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 AC126755.2-208ENST00000327792 462 ntBASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 AC138969.1-213ENST00000331436 462 ntBASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 RNA5SP191-201ENST00000362585 102 ntBASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 RN7SKP227-201ENST00000364445 330 ntBASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 ATP5HP3-201ENST00000396994 486 ntBASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.99□□□□□ -1.61
HDDC3Q8N4P3 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms