Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL359757.1-201ENST00000623176 255 ntBASIC4.41□□□□□ -1.7
LIM2P55344 AC108751.5-201ENST00000492880 1336 ntBASIC4.41□□□□□ -1.7
LIM2P55344 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
LIM2P55344 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.41□□□□□ -1.7
LIM2P55344 SPATA2P1-201ENST00000431223 2055 ntBASIC4.41□□□□□ -1.7
LIM2P55344 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIM2P55344 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.4□□□□□ -1.7
LIM2P55344 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
LIM2P55344 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
LIM2P55344 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 AC103591.2-201ENST00000265259 766 ntBASIC4.4□□□□□ -1.71
LIM2P55344 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LIM2P55344 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LIM2P55344 RNU6-1263P-201ENST00000384601 106 ntBASIC4.4□□□□□ -1.71
LIM2P55344 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 AC093084.1-201ENST00000424233 687 ntBASIC4.4□□□□□ -1.71
LIM2P55344 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.4□□□□□ -1.71
LIM2P55344 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 BUD31P2-201ENST00000449374 300 ntBASIC4.4□□□□□ -1.71
LIM2P55344 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.4□□□□□ -1.71
LIM2P55344 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.4□□□□□ -1.71
LIM2P55344 AL390726.5-202ENST00000564800 256 ntBASIC4.4□□□□□ -1.71
LIM2P55344 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.4□□□□□ -1.71
LIM2P55344 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.4□□□□□ -1.71
LIM2P55344 COX6CP4-201ENST00000605798 228 ntBASIC4.4□□□□□ -1.71
LIM2P55344 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.4□□□□□ -1.71
LIM2P55344 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIM2P55344 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.4□□□□□ -1.71
LIM2P55344 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIM2P55344 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.4□□□□□ -1.71
LIM2P55344 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
LIM2P55344 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIM2P55344 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.39□□□□□ -1.71
LIM2P55344 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.39□□□□□ -1.71
LIM2P55344 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.39□□□□□ -1.71
LIM2P55344 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 Z98745.1-201ENST00000402553 494 ntBASIC4.39□□□□□ -1.71
LIM2P55344 RN7SKP106-201ENST00000410832 272 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.39□□□□□ -1.71
LIM2P55344 AL356806.1-201ENST00000422524 916 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.39□□□□□ -1.71
LIM2P55344 HSPE1P16-201ENST00000426640 348 ntBASIC4.39□□□□□ -1.71
LIM2P55344 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.39□□□□□ -1.71
LIM2P55344 AL157884.3-201ENST00000448273 1184 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.39□□□□□ -1.71
LIM2P55344 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.39□□□□□ -1.71
LIM2P55344 RPL12P20-201ENST00000475538 479 ntBASIC4.39□□□□□ -1.71
LIM2P55344 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
LIM2P55344 DEFB109F-201ENST00000491870 277 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AC098799.3-201ENST00000506095 438 ntBASIC4.39□□□□□ -1.71
LIM2P55344 RNU6-491P-201ENST00000516099 110 ntBASIC4.39□□□□□ -1.71
LIM2P55344 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.39□□□□□ -1.71
LIM2P55344 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.39□□□□□ -1.71
LIM2P55344 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.39□□□□□ -1.71
LIM2P55344 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.39□□□□□ -1.71
LIM2P55344 AC015912.2-201ENST00000571053 181 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AC209154.1-201ENST00000582156 337 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.39□□□□□ -1.71
LIM2P55344 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.39□□□□□ -1.71
LIM2P55344 AC005520.3-201ENST00000602874 370 ntBASIC4.39□□□□□ -1.71
LIM2P55344 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.39□□□□□ -1.71
LIM2P55344 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.39□□□□□ -1.71
LIM2P55344 HMGB1P51-201ENST00000605166 638 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AC012467.1-201ENST00000607740 256 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.39□□□□□ -1.71
LIM2P55344 AL161616.1-201ENST00000611867 286 ntBASIC4.39□□□□□ -1.71
LIM2P55344 AL133370.2-201ENST00000619934 439 ntBASIC4.39□□□□□ -1.71
LIM2P55344 U3.53-201ENST00000628922 216 ntBASIC4.39□□□□□ -1.71
LIM2P55344 MTCO1P15-201ENST00000529569 1526 ntBASIC4.39□□□□□ -1.71
LIM2P55344 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.39□□□□□ -1.71
LIM2P55344 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
LIM2P55344 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
LIM2P55344 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIM2P55344 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.39□□□□□ -1.71
LIM2P55344 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 152.8 ms