Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
BRCA1P38398 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BRCA1P38398 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
BRCA1P38398 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
BRCA1P38398 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BRCA1P38398 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
BRCA1P38398 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
BRCA1P38398 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
BRCA1P38398 RNU1-14P-201ENST00000362759 152 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 CRYBB2P1-203ENST00000415709 538 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 AL035246.1-201ENST00000433554 1255 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 MRPS21P3-201ENST00000436696 262 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 AC093166.2-201ENST00000455969 1017 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 RPL23AP53-201ENST00000521854 457 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 AC005868.1-201ENST00000536421 331 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.41□□□□□ -1.54
BRCA1P38398 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.41□□□□□ -1.54
BRCA1P38398 NPM1P5-201ENST00000557228 838 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
BRCA1P38398 AC012468.1-201ENST00000604888 430 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 RNA5SP439-201ENST00000617595 124 ntBASIC5.41□□□□□ -1.54
BRCA1P38398 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
BRCA1P38398 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
BRCA1P38398 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BRCA1P38398 AP000641.1-201ENST00000531988 1639 ntBASIC5.4□□□□□ -1.54
BRCA1P38398 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
BRCA1P38398 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.4□□□□□ -1.54
BRCA1P38398 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.54
BRCA1P38398 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
BRCA1P38398 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.4□□□□□ -1.54
BRCA1P38398 AC092162.3-201ENST00000624511 1624 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 Z74021.1-201ENST00000423610 407 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 RPL21P43-201ENST00000425440 472 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.4□□□□□ -1.55
BRCA1P38398 TCEA1P3-201ENST00000443005 880 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.4□□□□□ -1.55
BRCA1P38398 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.4□□□□□ -1.55
BRCA1P38398 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.4□□□□□ -1.55
BRCA1P38398 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
BRCA1P38398 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.4□□□□□ -1.55
BRCA1P38398 RNA5SP519-201ENST00000516480 119 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.4□□□□□ -1.55
BRCA1P38398 AP000619.3-201ENST00000535634 1127 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.4□□□□□ -1.55
BRCA1P38398 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.4□□□□□ -1.55
BRCA1P38398 AC107982.3-201ENST00000584957 985 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.4□□□□□ -1.55
BRCA1P38398 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.4□□□□□ -1.55
BRCA1P38398 FAM27D1-201ENST00000612308 341 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 AC005899.7-201ENST00000618199 588 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 CR392039.5-201ENST00000623201 510 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.4□□□□□ -1.55
BRCA1P38398 LINC01808-202ENST00000641680 1116 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
BRCA1P38398 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
BRCA1P38398 TRIM51GP-201ENST00000534741 1350 ntBASIC5.4□□□□□ -1.55
BRCA1P38398 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
BRCA1P38398 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
BRCA1P38398 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
BRCA1P38398 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.39□□□□□ -1.55
BRCA1P38398 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
BRCA1P38398 RNA5SP513-201ENST00000364648 118 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.39□□□□□ -1.55
BRCA1P38398 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 AC009506.2-201ENST00000420635 840 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 TBCAP1-201ENST00000436520 327 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
BRCA1P38398 RPL5P32-201ENST00000454085 879 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.39□□□□□ -1.55
BRCA1P38398 AC097486.1-201ENST00000515331 210 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.39□□□□□ -1.55
BRCA1P38398 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.39□□□□□ -1.55
BRCA1P38398 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
BRCA1P38398 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 AL451086.1-201ENST00000605596 223 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 MIR7151-201ENST00000617477 60 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 AC243756.2-201ENST00000618406 463 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.39□□□□□ -1.55
BRCA1P38398 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
BRCA1P38398 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
BRCA1P38398 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
BRCA1P38398 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
BRCA1P38398 AL450345.1-202ENST00000605741 3881 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.39□□□□□ -1.55
BRCA1P38398 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 RPS27AP17-201ENST00000463344 455 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 AC110768.1-201ENST00000509222 400 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.39□□□□□ -1.55
BRCA1P38398 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.39□□□□□ -1.55
BRCA1P38398 AL161729.3-201ENST00000603533 673 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 SNORA51-201ENST00000606420 132 ntBASIC5.39□□□□□ -1.55
BRCA1P38398 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
BRCA1P38398 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms