Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL132640.2-201ENST00000559968 1698 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 AL355578.1-201ENST00000607405 1328 ntBASIC6□□□□□ -1.45
SMARCA1P28370 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC6□□□□□ -1.45
SMARCA1P28370 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6□□□□□ -1.45
SMARCA1P28370 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6□□□□□ -1.45
SMARCA1P28370 ERVFRD-3-201ENST00000578561 1617 ntBASIC6□□□□□ -1.45
SMARCA1P28370 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6□□□□□ -1.45
SMARCA1P28370 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SMARCA1P28370 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6□□□□□ -1.45
SMARCA1P28370 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
SMARCA1P28370 ADAM24P-201ENST00000398655 2101 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AL034374.1-201ENST00000406329 351 ntBASIC6□□□□□ -1.45
SMARCA1P28370 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 AL449283.1-202ENST00000418249 604 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 EIF4A1P1-201ENST00000420241 934 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AC005005.2-201ENST00000420779 380 ntBASIC6□□□□□ -1.45
SMARCA1P28370 DDX39BP1-205ENST00000422507 192 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC6□□□□□ -1.45
SMARCA1P28370 USP9YP24-201ENST00000434374 697 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 MTCO2P20-201ENST00000437339 673 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC6□□□□□ -1.45
SMARCA1P28370 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6□□□□□ -1.45
SMARCA1P28370 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC6□□□□□ -1.45
SMARCA1P28370 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC6□□□□□ -1.45
SMARCA1P28370 USP9YP17-201ENST00000444617 696 ntBASIC6□□□□□ -1.45
SMARCA1P28370 RPS20P4-201ENST00000461659 355 ntBASIC6□□□□□ -1.45
SMARCA1P28370 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 AC119751.5-201ENST00000514077 770 ntBASIC6□□□□□ -1.45
SMARCA1P28370 RNU6-1308P-201ENST00000516817 103 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6□□□□□ -1.45
SMARCA1P28370 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC6□□□□□ -1.45
SMARCA1P28370 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6□□□□□ -1.45
SMARCA1P28370 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC6□□□□□ -1.45
SMARCA1P28370 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6□□□□□ -1.45
SMARCA1P28370 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 AC007448.1-201ENST00000582714 234 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AC004223.2-201ENST00000590309 544 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AC006116.3-201ENST00000592968 361 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 AC097478.2-201ENST00000610572 514 ntBASIC6□□□□□ -1.45
SMARCA1P28370 RPSAP73-201ENST00000614820 330 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AC022079.1-201ENST00000621546 602 ntBASIC6□□□□□ -1.45
SMARCA1P28370 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6□□□□□ -1.45
SMARCA1P28370 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
SMARCA1P28370 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
SMARCA1P28370 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6□□□□□ -1.45
SMARCA1P28370 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
SMARCA1P28370 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.99□□□□□ -1.45
SMARCA1P28370 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SMARCA1P28370 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SMARCA1P28370 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SMARCA1P28370 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SMARCA1P28370 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SMARCA1P28370 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.99□□□□□ -1.45
SMARCA1P28370 THAP12P4-201ENST00000528321 2266 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.99□□□□□ -1.45
SMARCA1P28370 C4BPAP1-201ENST00000415474 1893 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.99□□□□□ -1.45
SMARCA1P28370 RPL23P2-201ENST00000320371 421 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
SMARCA1P28370 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.99□□□□□ -1.45
SMARCA1P28370 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SMARCA1P28370 U6.112-201ENST00000384129 70 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 RNU6-906P-201ENST00000384700 70 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 TAS2R15P-201ENST00000390674 928 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 SPTLC1P2-201ENST00000407089 121 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 AC211486.3-201ENST00000412694 621 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 AL121878.1-201ENST00000418638 859 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SMARCA1P28370 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.99□□□□□ -1.45
SMARCA1P28370 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.99□□□□□ -1.45
SMARCA1P28370 RPL12P28-201ENST00000430852 489 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 AL035458.1-201ENST00000433096 585 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.99□□□□□ -1.45
SMARCA1P28370 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
SMARCA1P28370 AC092647.2-201ENST00000452998 253 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 PSMC1P13-201ENST00000458195 985 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 AC096992.1-201ENST00000459808 709 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 AC110749.1-201ENST00000462007 357 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 AC134050.1-201ENST00000495088 933 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 AC008953.1-201ENST00000497334 318 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 AC026414.1-201ENST00000504046 698 ntBASIC5.99□□□□□ -1.45
SMARCA1P28370 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
SMARCA1P28370 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms