Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CDY14P-201ENST00000431260 1014 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SDCBPO00560 VN1R54P-201ENST00000435210 1049 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 CYCSP11-201ENST00000436426 315 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AC005154.2-201ENST00000438110 379 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 CDY12P-201ENST00000440679 1015 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 CDY13P-201ENST00000445813 1015 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AC108463.1-201ENST00000450258 347 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 CDY23P-201ENST00000451661 1014 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC3.8□□□□□ -1.8
SDCBPO00560 RPL36AP41-201ENST00000493820 306 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SDCBPO00560 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SDCBPO00560 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC3.8□□□□□ -1.8
SDCBPO00560 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC3.8□□□□□ -1.8
SDCBPO00560 OR1F2P-201ENST00000570470 933 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AC090181.2-201ENST00000602975 672 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AC023762.1-201ENST00000603280 584 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AC098935.2-201ENST00000604222 466 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AC010201.1-201ENST00000605051 540 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AL445528.2-201ENST00000620582 470 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 U3.53-201ENST00000628922 216 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 AC138627.1-204ENST00000641894 765 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC3.8□□□□□ -1.8
SDCBPO00560 ARHGAP42P1-201ENST00000507474 1976 ntBASIC3.8□□□□□ -1.8
SDCBPO00560 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC3.8□□□□□ -1.8
SDCBPO00560 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SDCBPO00560 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC3.79□□□□□ -1.8
SDCBPO00560 AC016588.2-201ENST00000632484 3021 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 AL590240.1-201ENST00000334118 313 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 RNU1-15P-201ENST00000353977 144 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 AL121834.1-202ENST00000404494 277 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 SLC9B1P4-201ENST00000421957 1288 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC3.79□□□□□ -1.8
SDCBPO00560 DYNLL1P7-201ENST00000429273 258 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.79□□□□□ -1.8
SDCBPO00560 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.79□□□□□ -1.8
SDCBPO00560 AC002553.2-201ENST00000453217 340 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 RPS3AP53-201ENST00000454716 778 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
SDCBPO00560 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.79□□□□□ -1.8
SDCBPO00560 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 LDHBP3-201ENST00000514909 822 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 MYL12AP1-201ENST00000518490 515 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.79□□□□□ -1.8
SDCBPO00560 BRD9P1-201ENST00000529855 560 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.79□□□□□ -1.8
SDCBPO00560 UBE2FP2-201ENST00000566646 462 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 AC091042.1-201ENST00000579213 173 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 NPM1P45-201ENST00000583151 559 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC3.79□□□□□ -1.8
SDCBPO00560 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC3.79□□□□□ -1.8
SDCBPO00560 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC3.79□□□□□ -1.8
SDCBPO00560 AL160290.3-201ENST00000604869 165 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 MIR6719-201ENST00000622428 87 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC3.79□□□□□ -1.8
SDCBPO00560 AC132825.8-201ENST00000640783 297 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC3.79□□□□□ -1.8
SDCBPO00560 AC139769.1-204ENST00000472297 1931 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC3.79□□□□□ -1.8
SDCBPO00560 MTCO1P15-201ENST00000529569 1526 ntBASIC3.79□□□□□ -1.8
SDCBPO00560 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SDCBPO00560 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
SDCBPO00560 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SDCBPO00560 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.79□□□□□ -1.8
SDCBPO00560 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
SDCBPO00560 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SDCBPO00560 Z98755.1-201ENST00000407015 1384 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 AL133243.3-201ENST00000617415 3004 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SDCBPO00560 MIR298-201ENST00000401212 88 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 AL078604.1-201ENST00000404609 466 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC3.78□□□□□ -1.8
SDCBPO00560 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.78□□□□□ -1.8
SDCBPO00560 ATG4AP1-201ENST00000416893 538 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 TEX41-205ENST00000431734 529 ntTSL 4 BASIC3.78□□□□□ -1.8
SDCBPO00560 AC008072.1-201ENST00000434254 824 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 HLA-N-201ENST00000437516 135 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 PA2G4P6-201ENST00000438325 1197 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 AC011753.3-201ENST00000443436 406 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC3.78□□□□□ -1.8
SDCBPO00560 GEMIN8P3-201ENST00000445417 720 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 MTND6P5-201ENST00000448266 512 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 AC092905.1-201ENST00000467527 949 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
SDCBPO00560 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.78□□□□□ -1.8
SDCBPO00560 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.78□□□□□ -1.8
SDCBPO00560 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SDCBPO00560 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.78□□□□□ -1.8
SDCBPO00560 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.78□□□□□ -1.8
SDCBPO00560 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms