Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PPM1AP1-201ENST00000502740 1135 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC025459.1-201ENST00000504072 156 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC119751.4-201ENST00000507498 357 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 HIGD1AP14-201ENST00000507617 282 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC112518.2-201ENST00000508565 425 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 RPS27AP18-201ENST00000515536 459 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 OR10G5P-201ENST00000532733 358 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC005868.1-201ENST00000536421 331 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC104229.1-201ENST00000561364 255 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AL390726.5-202ENST00000564800 256 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC104763.3-201ENST00000613765 618 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AL359513.1-201ENST00000614364 557 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC018926.1-201ENST00000616335 435 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AP004607.9-201ENST00000618202 316 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 AP000648.2-201ENST00000624182 404 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC136428.4-201ENST00000634254 1155 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AL356118.1-201ENST00000635272 1078 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 SPATA2P1-201ENST00000431223 2055 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 MAPK10-320ENST00000641462 6696 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC007342.7-201ENST00000624610 2337 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
NKX3-1Q99801 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NKX3-1Q99801 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NKX3-1Q99801 SNORA74A-201ENST00000364089 198 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 RNU6-925P-201ENST00000384629 104 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
NKX3-1Q99801 RPL22P22-201ENST00000395439 379 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AL034374.1-201ENST00000406329 351 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 BX510359.3-201ENST00000422168 306 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AL139148.1-201ENST00000427122 680 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 RPS11P7-201ENST00000442125 465 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AL163193.1-201ENST00000444895 788 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC069540.1-201ENST00000446320 988 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 MTATP6P14-201ENST00000455189 673 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC093166.2-201ENST00000455969 1017 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 RPL7P40-201ENST00000481703 745 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 OR5M14P-201ENST00000506803 618 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC105031.1-201ENST00000518550 476 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC013701.1-201ENST00000522657 465 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 MTND1P6-201ENST00000523621 946 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AL049779.2-201ENST00000553847 315 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AGGF1P9-201ENST00000561884 913 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC090666.1-201ENST00000578241 445 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC068620.3-201ENST00000602749 560 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC211433.2-201ENST00000608433 387 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC005156.1-201ENST00000613371 573 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms