Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CHD3Q12873 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CHD3Q12873 RN7SKP114-201ENST00000410327 279 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 RNA5SP296-201ENST00000410523 111 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC4.11□□□□□ -1.75
CHD3Q12873 LINC01881-201ENST00000416103 412 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 COX6CP13-201ENST00000428703 226 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AC097523.2-201ENST00000435551 652 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.11□□□□□ -1.75
CHD3Q12873 MRPL35P2-201ENST00000448009 511 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.11□□□□□ -1.75
CHD3Q12873 SUMO2P4-201ENST00000504193 276 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.11□□□□□ -1.75
CHD3Q12873 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.11□□□□□ -1.75
CHD3Q12873 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.11□□□□□ -1.75
CHD3Q12873 AC007224.1-201ENST00000564410 144 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 MIR3939-201ENST00000582614 106 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 BNIP3P33-201ENST00000598912 569 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AL445423.1-201ENST00000609941 536 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 AC005962.2-201ENST00000611427 652 ntBASIC4.11□□□□□ -1.75
CHD3Q12873 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHD3Q12873 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.11□□□□□ -1.75
CHD3Q12873 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.1□□□□□ -1.75
CHD3Q12873 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.1□□□□□ -1.75
CHD3Q12873 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.1□□□□□ -1.75
CHD3Q12873 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.1□□□□□ -1.75
CHD3Q12873 AC010928.1-201ENST00000592477 1447 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CHD3Q12873 SNORA48.7-201ENST00000391302 135 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 BX510359.2-201ENST00000417920 305 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 AC004074.1-201ENST00000421810 1063 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CHD3Q12873 Z74021.1-201ENST00000423610 407 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 FABP7P1-201ENST00000424004 391 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 AC023141.6-201ENST00000429418 337 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.1□□□□□ -1.75
CHD3Q12873 OR1H1P-201ENST00000448731 937 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.1□□□□□ -1.75
CHD3Q12873 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.1□□□□□ -1.75
CHD3Q12873 RPL12P20-201ENST00000475538 479 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.1□□□□□ -1.75
CHD3Q12873 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.1□□□□□ -1.75
CHD3Q12873 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.1□□□□□ -1.75
CHD3Q12873 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.1□□□□□ -1.75
CHD3Q12873 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.1□□□□□ -1.75
CHD3Q12873 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.1□□□□□ -1.75
CHD3Q12873 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.1□□□□□ -1.75
CHD3Q12873 AC093249.4-201ENST00000564755 259 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.1□□□□□ -1.75
CHD3Q12873 MIR6716-201ENST00000613413 80 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CHD3Q12873 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.1□□□□□ -1.75
CHD3Q12873 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.1□□□□□ -1.75
CHD3Q12873 AC000123.3-201ENST00000624029 4975 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHD3Q12873 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CHD3Q12873 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHD3Q12873 UGT2B26P-201ENST00000508672 1613 ntBASIC4.1□□□□□ -1.75
CHD3Q12873 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHD3Q12873 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHD3Q12873 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CHD3Q12873 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CHD3Q12873 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHD3Q12873 AL359837.1-201ENST00000381357 287 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.09□□□□□ -1.75
CHD3Q12873 AC122718.1-201ENST00000439448 744 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CHD3Q12873 RPS5P7-201ENST00000456664 608 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 FAM133DP-201ENST00000464802 691 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 AC111000.3-201ENST00000508057 576 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.09□□□□□ -1.75
CHD3Q12873 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.09□□□□□ -1.75
CHD3Q12873 RNA5SP464-201ENST00000516251 108 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 AC022882.1-201ENST00000532142 501 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.09□□□□□ -1.75
CHD3Q12873 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.09□□□□□ -1.75
CHD3Q12873 AC021106.3-201ENST00000623925 531 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CHD3Q12873 AL592148.3-201ENST00000608771 2646 ntBASIC4.09□□□□□ -1.75
CHD3Q12873 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHD3Q12873 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CHD3Q12873 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.09□□□□□ -1.75
CHD3Q12873 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHD3Q12873 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.09□□□□□ -1.75
CHD3Q12873 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CHD3Q12873 Z98755.1-201ENST00000407015 1384 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 AC017079.1-201ENST00000333650 415 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 RNA5SP191-201ENST00000362585 102 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.76
CHD3Q12873 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.09□□□□□ -1.76
CHD3Q12873 TBCAP2-201ENST00000416175 326 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CHD3Q12873 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.09□□□□□ -1.76
CHD3Q12873 RPS6P2-201ENST00000454208 705 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.09□□□□□ -1.76
CHD3Q12873 NIP7P2-201ENST00000485801 544 ntBASIC4.09□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms