Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RBM43P1-201ENST00000476891 1081 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 H3F3AP3-201ENST00000497682 407 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC023818.1-201ENST00000498379 384 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC018645.1-201ENST00000505003 109 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 KCTD9P2-201ENST00000512203 1013 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 SNORA18.6-201ENST00000516792 115 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC022878.1-201ENST00000530684 149 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC027667.1-201ENST00000545814 304 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 HMGN1P26-201ENST00000558737 303 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC018558.5-201ENST00000565840 952 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC067852.5-201ENST00000589299 310 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC010487.1-201ENST00000594408 1172 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 DYNLL1P1-201ENST00000595442 269 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC012175.1-201ENST00000603755 531 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC019257.2-201ENST00000605539 497 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC135068.11-201ENST00000636378 921 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 WBP11P1-201ENST00000562560 1931 ntBASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
UBE3DQ7Z6J8 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC011455.2-201ENST00000599320 3336 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 RNU6-492P-201ENST00000363035 104 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 SNORD35A-201ENST00000363389 86 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 RNU1-84P-201ENST00000365447 164 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 RNU6-1122P-201ENST00000384449 107 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 SNORD94-201ENST00000386037 137 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AL391419.1-201ENST00000398901 1275 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC073335.1-201ENST00000427776 363 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC003989.1-201ENST00000434569 565 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AL451136.1-201ENST00000435399 325 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 PA2G4P1-201ENST00000442248 1197 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC093019.1-201ENST00000443135 252 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AL034369.1-201ENST00000453808 477 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 RPS4XP17-201ENST00000479057 754 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC022206.1-201ENST00000495947 347 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 RNF138P1-201ENST00000502765 546 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 NDUFB4P2-201ENST00000509515 391 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AL133399.1-201ENST00000527476 298 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC008126.1-201ENST00000549019 480 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 DUX4L52-201ENST00000549363 777 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 RN7SL475P-201ENST00000583379 298 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC112191.3-201ENST00000604371 277 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC010200.2-201ENST00000605098 235 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 AC110373.1-201ENST00000505994 3505 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 SAGE3P-201ENST00000619800 1635 ntBASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
UBE3DQ7Z6J8 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms