Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
HOXD4P09016 MIR7-1-201ENST00000384871 110 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 OR1F12-201ENST00000402365 945 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AL139039.2-201ENST00000407436 479 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 SNORA79B-201ENST00000410557 148 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 CR848007.2-201ENST00000424918 787 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXD4P09016 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXD4P09016 AC011753.3-201ENST00000443436 406 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 CYCSP24-201ENST00000445119 316 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 BTF3P6-201ENST00000448054 499 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 C1DP3-201ENST00000455013 423 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 CYCSP53-201ENST00000455540 265 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXD4P09016 RPL7AP28-201ENST00000464513 571 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXD4P09016 AC113430.1-201ENST00000506872 718 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.55□□□□□ -1.68
HOXD4P09016 RNA5SP303-201ENST00000516192 130 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 RAB9BP1-201ENST00000519581 626 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AC021006.3-201ENST00000530771 192 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXD4P09016 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 AC009117.1-201ENST00000563948 554 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXD4P09016 MIR4270-201ENST00000581799 70 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 MIR4737-201ENST00000583979 81 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXD4P09016 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXD4P09016 AC009032.1-201ENST00000617574 431 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXD4P09016 AL162233.1-201ENST00000620014 944 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 AL138960.2-201ENST00000625145 535 ntBASIC4.55□□□□□ -1.68
HOXD4P09016 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXD4P09016 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXD4P09016 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXD4P09016 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXD4P09016 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
HOXD4P09016 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXD4P09016 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXD4P09016 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXD4P09016 DDX18P4-201ENST00000511690 1966 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 MTND4P21-201ENST00000453886 1357 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXD4P09016 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXD4P09016 AC007382.1-201ENST00000624376 2618 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HOXD4P09016 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HOXD4P09016 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 Y_RNA.110-201ENST00000363220 99 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 RNU6-883P-201ENST00000384597 107 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXD4P09016 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXD4P09016 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXD4P09016 RPL19P16-201ENST00000433839 588 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 AL590762.3-201ENST00000436372 640 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXD4P09016 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXD4P09016 AL137845.2-201ENST00000444292 988 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 RPS15AP29-201ENST00000445539 400 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXD4P09016 RPL31P53-201ENST00000457065 348 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 MTND2P39-201ENST00000457230 764 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 MTND6P32-201ENST00000457611 483 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXD4P09016 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 GAPDHP56-201ENST00000506031 988 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXD4P09016 TCP11X3P-202ENST00000514289 1254 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.54□□□□□ -1.68
HOXD4P09016 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXD4P09016 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXD4P09016 AC012414.2-201ENST00000559474 187 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 AC018552.1-201ENST00000562099 811 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXD4P09016 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms