Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 HMGB1P40-201ENST00000525121 540 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC004923.2-201ENST00000529649 369 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AL049779.2-201ENST00000553847 315 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC005341.1-201ENST00000571086 708 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 MTND4LP24-201ENST00000572277 291 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC093765.1-201ENST00000603758 881 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC067852.7-201ENST00000623270 535 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AC011815.3-201ENST00000624194 473 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 AP000542.2-201ENST00000623199 6179 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VMP1Q96GC9 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VMP1Q96GC9 RARSP1-201ENST00000542842 1418 ntBASIC5.06□□□□□ -1.6
VMP1Q96GC9 AL022393.1-201ENST00000625142 1677 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 OR1L6-202ENST00000373684 1044 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 MIR142-201ENST00000384835 87 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 HMGB1P13-201ENST00000406019 642 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 MIR1286-201ENST00000408112 78 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AL390774.1-201ENST00000411924 246 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 GTF3AP1-201ENST00000416942 1004 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 RPS12P5-201ENST00000423449 371 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 RPL30P3-201ENST00000424262 333 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 RPL7L1P9-201ENST00000431298 745 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AL353093.1-201ENST00000441292 436 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AL606490.1-201ENST00000452266 765 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 MTND2P3-201ENST00000452458 470 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 RN7SL629P-201ENST00000489622 285 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 PRELID3BP7-201ENST00000503606 469 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 RPEP1-201ENST00000504507 658 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AL121594.4-201ENST00000556211 1196 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 RN7SL435P-201ENST00000584418 282 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AP003117.1-201ENST00000602771 554 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC010857.1-201ENST00000606398 594 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 OR6R2P-201ENST00000609216 300 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 U6.48-201ENST00000618523 106 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC008115.4-201ENST00000619780 775 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AL118508.4-201ENST00000624142 1176 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC100778.3-201ENST00000580060 1750 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC018529.3-201ENST00000624212 2254 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
VMP1Q96GC9 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VMP1Q96GC9 AC092162.3-201ENST00000624511 1624 ntBASIC5.05□□□□□ -1.6
VMP1Q96GC9 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 CR788268.1-201ENST00000603931 1809 ntBASIC5.04□□□□□ -1.6
VMP1Q96GC9 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VMP1Q96GC9 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.04□□□□□ -1.6
VMP1Q96GC9 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms