Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.51□□□□□ -1.53
BRCA1P38398 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.51□□□□□ -1.53
BRCA1P38398 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
BRCA1P38398 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
BRCA1P38398 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
BRCA1P38398 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 AP000432.2-201ENST00000624164 2048 ntBASIC5.51□□□□□ -1.53
BRCA1P38398 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.51□□□□□ -1.53
BRCA1P38398 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
BRCA1P38398 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
BRCA1P38398 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.51□□□□□ -1.53
BRCA1P38398 AC244100.1-202ENST00000621554 382 ntBASIC5.51□□□□□ -1.53
BRCA1P38398 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRCA1P38398 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
BRCA1P38398 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.5□□□□□ -1.53
BRCA1P38398 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
BRCA1P38398 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
BRCA1P38398 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.5□□□□□ -1.53
BRCA1P38398 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.5□□□□□ -1.53
BRCA1P38398 PCAT14-202ENST00000627127 3935 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
BRCA1P38398 UBBP2-201ENST00000376781 231 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 Z98745.1-201ENST00000402553 494 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.5□□□□□ -1.53
BRCA1P38398 CYCSP43-201ENST00000438233 310 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 ISCUP1-201ENST00000454451 448 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
BRCA1P38398 AC022336.1-201ENST00000475510 337 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 AP000889.1-201ENST00000530968 660 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.5□□□□□ -1.53
BRCA1P38398 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
BRCA1P38398 GTF2IP22-201ENST00000554443 182 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 AL049830.4-201ENST00000555149 351 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 AL357559.1-201ENST00000622228 274 ntBASIC5.5□□□□□ -1.53
BRCA1P38398 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
BRCA1P38398 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
BRCA1P38398 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
BRCA1P38398 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.5□□□□□ -1.53
BRCA1P38398 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.5□□□□□ -1.53
BRCA1P38398 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.5□□□□□ -1.53
BRCA1P38398 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
BRCA1P38398 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.49□□□□□ -1.53
BRCA1P38398 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
BRCA1P38398 AL162151.2-201ENST00000448875 158 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.49□□□□□ -1.53
BRCA1P38398 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.49□□□□□ -1.53
BRCA1P38398 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.49□□□□□ -1.53
BRCA1P38398 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
BRCA1P38398 AC015912.2-201ENST00000571053 181 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 AC087499.8-201ENST00000578406 226 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 AC091953.5-201ENST00000622919 233 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
BRCA1P38398 AC109446.4-201ENST00000623235 2755 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 AP000473.2-201ENST00000602659 1537 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
BRCA1P38398 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
BRCA1P38398 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
BRCA1P38398 AL035696.2-201ENST00000407941 709 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.49□□□□□ -1.53
BRCA1P38398 PTMAP3-201ENST00000447474 330 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 EIF2S2P5-201ENST00000457635 968 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.49□□□□□ -1.53
BRCA1P38398 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.49□□□□□ -1.53
BRCA1P38398 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.49□□□□□ -1.53
BRCA1P38398 AC112484.5-201ENST00000624189 228 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
BRCA1P38398 AP001153.1-201ENST00000641024 338 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
BRCA1P38398 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
BRCA1P38398 AP001273.1-201ENST00000624493 3152 ntBASIC5.49□□□□□ -1.53
BRCA1P38398 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.48□□□□□ -1.53
BRCA1P38398 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
BRCA1P38398 MIR449B-201ENST00000384995 97 ntBASIC5.48□□□□□ -1.53
BRCA1P38398 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.48□□□□□ -1.53
BRCA1P38398 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.48□□□□□ -1.53
BRCA1P38398 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.48□□□□□ -1.53
BRCA1P38398 AL157831.1-201ENST00000426134 473 ntBASIC5.48□□□□□ -1.53
BRCA1P38398 AC098799.3-201ENST00000506095 438 ntBASIC5.48□□□□□ -1.53
BRCA1P38398 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.48□□□□□ -1.53
BRCA1P38398 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.48□□□□□ -1.53
BRCA1P38398 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.48□□□□□ -1.53
BRCA1P38398 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.48□□□□□ -1.53
BRCA1P38398 AL160281.1-201ENST00000605307 311 ntBASIC5.48□□□□□ -1.53
BRCA1P38398 AC084757.4-201ENST00000616350 526 ntBASIC5.48□□□□□ -1.53
BRCA1P38398 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
BRCA1P38398 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.48□□□□□ -1.53
BRCA1P38398 MAPK10-328ENST00000641553 4009 ntBASIC5.48□□□□□ -1.53
BRCA1P38398 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
BRCA1P38398 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
BRCA1P38398 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms