Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC005034.4-201ENST00000603612 899 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 AC010201.1-201ENST00000605051 540 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 MIR7151-201ENST00000617477 60 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 FP325313.1-201ENST00000638228 703 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL5A3P25940 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 NPM1P36-201ENST00000415681 835 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.57□□□□□ -1.52
COL5A3P25940 AC091959.2-201ENST00000477363 321 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.57□□□□□ -1.52
COL5A3P25940 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.57□□□□□ -1.52
COL5A3P25940 RNA5SP73-201ENST00000516744 108 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 AL161729.3-201ENST00000603533 673 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
COL5A3P25940 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL5A3P25940 AC100778.3-201ENST00000580060 1750 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 AL133243.3-201ENST00000617415 3004 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL5A3P25940 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.56□□□□□ -1.52
COL5A3P25940 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.56□□□□□ -1.52
COL5A3P25940 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 AL359922.3-201ENST00000624779 1670 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
COL5A3P25940 RPS20P14-201ENST00000412545 360 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 MRPL50P1-201ENST00000431951 384 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 RPS20P4-201ENST00000461659 355 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 AC087477.6-201ENST00000559595 843 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 ADAD1P2-201ENST00000588476 646 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.56□□□□□ -1.52
COL5A3P25940 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 AL137141.1-201ENST00000624622 4836 ntBASIC5.56□□□□□ -1.52
COL5A3P25940 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL5A3P25940 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A3P25940 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A3P25940 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A3P25940 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.55□□□□□ -1.52
COL5A3P25940 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL5A3P25940 RNA5SP124-201ENST00000362739 110 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
COL5A3P25940 RNA5SP36-201ENST00000410197 133 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 AL117339.2-201ENST00000430475 180 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A3P25940 UBE2V1P3-201ENST00000439651 417 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A3P25940 AC099522.1-202ENST00000514718 367 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A3P25940 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.55□□□□□ -1.52
COL5A3P25940 CCNG2P1-201ENST00000549521 1000 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 AP005901.4-201ENST00000577336 569 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A3P25940 AC079587.1-201ENST00000603846 277 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 AL356863.1-201ENST00000623378 1080 ntBASIC5.55□□□□□ -1.52
COL5A3P25940 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL5A3P25940 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL5A3P25940 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
COL5A3P25940 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
COL5A3P25940 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A3P25940 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL5A3P25940 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A3P25940 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL5A3P25940 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A3P25940 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
COL5A3P25940 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL5A3P25940 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 RNA5SP307-201ENST00000362863 116 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 SNORD46.1-201ENST00000364139 104 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 RNA5SP130-201ENST00000364431 114 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.54□□□□□ -1.52
COL5A3P25940 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.54□□□□□ -1.52
COL5A3P25940 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A3P25940 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.54□□□□□ -1.52
COL5A3P25940 RNA5SP116-201ENST00000516132 98 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 SNORA67.7-201ENST00000516664 135 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.54□□□□□ -1.52
COL5A3P25940 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.54□□□□□ -1.52
COL5A3P25940 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A3P25940 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.54□□□□□ -1.52
COL5A3P25940 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL5A3P25940 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.54□□□□□ -1.52
COL5A3P25940 MIR6875-201ENST00000617506 72 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 TMEM30CP-203ENST00000637814 1035 ntBASIC5.54□□□□□ -1.52
COL5A3P25940 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL5A3P25940 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms