Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNA5SP123-201ENST00000363244 119 ntBASIC4.48□□□□□ -1.69
SDC1P18827 RNU6-1251P-201ENST00000364502 107 ntBASIC4.48□□□□□ -1.69
SDC1P18827 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SDC1P18827 GAPDHP15-201ENST00000398586 975 ntBASIC4.48□□□□□ -1.69
SDC1P18827 MIR921-201ENST00000401133 56 ntBASIC4.48□□□□□ -1.69
SDC1P18827 RN7SKP213-201ENST00000410746 298 ntBASIC4.48□□□□□ -1.69
SDC1P18827 GTF3AP1-201ENST00000416942 1004 ntBASIC4.48□□□□□ -1.69
SDC1P18827 AC106901.1-201ENST00000425086 698 ntBASIC4.48□□□□□ -1.69
SDC1P18827 OR2B7P-201ENST00000429302 934 ntBASIC4.48□□□□□ -1.69
SDC1P18827 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.48□□□□□ -1.69
SDC1P18827 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.48□□□□□ -1.69
SDC1P18827 AL157884.3-201ENST00000448273 1184 ntBASIC4.48□□□□□ -1.69
SDC1P18827 MTND2P3-201ENST00000452458 470 ntBASIC4.48□□□□□ -1.69
SDC1P18827 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.48□□□□□ -1.69
SDC1P18827 RPS5P7-201ENST00000456664 608 ntBASIC4.48□□□□□ -1.69
SDC1P18827 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.48□□□□□ -1.69
SDC1P18827 LARP7P4-201ENST00000481075 878 ntBASIC4.48□□□□□ -1.69
SDC1P18827 AC004815.1-201ENST00000484185 331 ntBASIC4.48□□□□□ -1.69
SDC1P18827 AC025164.1-201ENST00000496249 478 ntBASIC4.48□□□□□ -1.69
SDC1P18827 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC4.48□□□□□ -1.69
SDC1P18827 AC067904.2-201ENST00000517322 1283 ntBASIC4.48□□□□□ -1.69
SDC1P18827 OR10G5P-201ENST00000532733 358 ntBASIC4.48□□□□□ -1.69
SDC1P18827 AC008033.2-201ENST00000542626 177 ntBASIC4.48□□□□□ -1.69
SDC1P18827 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.48□□□□□ -1.69
SDC1P18827 AL358913.1-201ENST00000554342 121 ntBASIC4.48□□□□□ -1.69
SDC1P18827 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC4.48□□□□□ -1.69
SDC1P18827 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.48□□□□□ -1.69
SDC1P18827 AC087763.1-201ENST00000603391 286 ntBASIC4.48□□□□□ -1.69
SDC1P18827 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
SDC1P18827 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SDC1P18827 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.48□□□□□ -1.69
SDC1P18827 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.48□□□□□ -1.69
SDC1P18827 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SDC1P18827 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SDC1P18827 AC108751.5-201ENST00000492880 1336 ntBASIC4.47□□□□□ -1.69
SDC1P18827 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 RNA5SP507-201ENST00000363603 121 ntBASIC4.47□□□□□ -1.69
SDC1P18827 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SDC1P18827 RNU6-1320P-201ENST00000390838 107 ntBASIC4.47□□□□□ -1.69
SDC1P18827 RNA5SP105-201ENST00000391123 113 ntBASIC4.47□□□□□ -1.69
SDC1P18827 RNU6-1269P-201ENST00000391139 107 ntBASIC4.47□□□□□ -1.69
SDC1P18827 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 RN7SKP229-201ENST00000410465 302 ntBASIC4.47□□□□□ -1.69
SDC1P18827 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.47□□□□□ -1.69
SDC1P18827 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.47□□□□□ -1.69
SDC1P18827 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.47□□□□□ -1.69
SDC1P18827 BUD31P2-201ENST00000449374 300 ntBASIC4.47□□□□□ -1.69
SDC1P18827 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.47□□□□□ -1.69
SDC1P18827 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.47□□□□□ -1.69
SDC1P18827 RNU6-599P-201ENST00000459383 107 ntBASIC4.47□□□□□ -1.69
SDC1P18827 RNU6-1193P-201ENST00000459461 107 ntBASIC4.47□□□□□ -1.69
SDC1P18827 EIF2S2P4-201ENST00000461070 984 ntBASIC4.47□□□□□ -1.69
SDC1P18827 SCARNA22-201ENST00000503991 125 ntBASIC4.47□□□□□ -1.69
SDC1P18827 AC110775.1-201ENST00000513721 462 ntBASIC4.47□□□□□ -1.69
SDC1P18827 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.47□□□□□ -1.69
SDC1P18827 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.47□□□□□ -1.69
SDC1P18827 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.47□□□□□ -1.69
SDC1P18827 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.47□□□□□ -1.69
SDC1P18827 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.47□□□□□ -1.69
SDC1P18827 KATNBL1P1-201ENST00000605192 748 ntBASIC4.47□□□□□ -1.69
SDC1P18827 AC007620.3-201ENST00000608131 497 ntBASIC4.47□□□□□ -1.69
SDC1P18827 RNU6-368P-201ENST00000620928 107 ntBASIC4.47□□□□□ -1.69
SDC1P18827 AC140113.4-201ENST00000622087 222 ntBASIC4.47□□□□□ -1.69
SDC1P18827 RNU6-538P-201ENST00000622329 107 ntBASIC4.47□□□□□ -1.69
SDC1P18827 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.47□□□□□ -1.69
SDC1P18827 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.47□□□□□ -1.69
SDC1P18827 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 INTS6P1-201ENST00000504674 2530 ntBASIC4.47□□□□□ -1.69
SDC1P18827 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.47□□□□□ -1.69
SDC1P18827 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.47□□□□□ -1.69
SDC1P18827 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.47□□□□□ -1.69
SDC1P18827 IRF5P1-201ENST00000504852 2164 ntBASIC4.47□□□□□ -1.69
SDC1P18827 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.47□□□□□ -1.69
SDC1P18827 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SDC1P18827 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
SDC1P18827 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.46□□□□□ -1.7
SDC1P18827 AL355852.1-201ENST00000454081 1771 ntBASIC4.46□□□□□ -1.7
SDC1P18827 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.46□□□□□ -1.7
SDC1P18827 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 MIR421-201ENST00000365696 85 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AMZ2P2-201ENST00000406819 1057 ntBASIC4.46□□□□□ -1.7
SDC1P18827 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.46□□□□□ -1.7
SDC1P18827 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.46□□□□□ -1.7
SDC1P18827 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.46□□□□□ -1.7
SDC1P18827 RPL21P43-201ENST00000425440 472 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AL445528.1-201ENST00000426330 420 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.46□□□□□ -1.7
SDC1P18827 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.46□□□□□ -1.7
SDC1P18827 PPIAP13-201ENST00000434706 478 ntBASIC4.46□□□□□ -1.7
SDC1P18827 Z99127.2-201ENST00000441426 334 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AL513343.1-201ENST00000451818 792 ntBASIC4.46□□□□□ -1.7
SDC1P18827 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 AC090142.1-201ENST00000465776 462 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms