Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 Z95152.1-201ENST00000453556 656 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC008280.2-201ENST00000455473 307 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 HSPE1P22-201ENST00000456856 327 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 SNORD125-201ENST00000459538 96 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 RPL6P9-201ENST00000466502 859 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 RN7SL583P-201ENST00000475692 287 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC021146.7-201ENST00000509604 775 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 HAUS1P3-201ENST00000523909 662 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AP003717.3-201ENST00000544832 1180 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC023050.2-201ENST00000544968 387 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 MIR4660-201ENST00000583549 74 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 BMS1P7-201ENST00000602440 1052 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC096553.1-201ENST00000605169 829 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AL451086.1-201ENST00000605596 223 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 PART1_2.1-201ENST00000612397 250 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC090897.3-201ENST00000636973 1157 ntBASIC5.61□□□□□ -1.51
DKK3Q9UBP4 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
DKK3Q9UBP4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC009962.1-201ENST00000567327 3813 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC097461.1-201ENST00000568928 2821 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AL121886.1-201ENST00000358609 435 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 RNA5SP319-201ENST00000362768 119 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 OR13C3-201ENST00000374781 1108 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 HMGB3P7-201ENST00000400214 611 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 HMGB1P13-201ENST00000406019 642 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC096921.1-201ENST00000411661 375 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC007161.1-204ENST00000423039 460 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 OR10T1P-201ENST00000424327 947 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC100832.1-201ENST00000471945 383 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 RN7SL184P-201ENST00000488308 297 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC108693.1-201ENST00000496068 432 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC090638.1-201ENST00000498296 909 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 NDUFB5P1-201ENST00000508134 564 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 RNU6-1028P-201ENST00000517164 93 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 ZNF92P3-201ENST00000596594 954 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC146944.4-201ENST00000602697 718 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC021171.1-201ENST00000603137 706 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC107952.2-201ENST00000606048 486 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC079395.2-201ENST00000610982 737 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC122108.2-201ENST00000611946 526 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC118658.2-201ENST00000618697 459 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC015722.2-201ENST00000622210 551 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 MIR8080-201ENST00000622224 89 ntBASIC5.6□□□□□ -1.51
DKK3Q9UBP4 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.6□□□□□ -1.51
DKK3Q9UBP4 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms