Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 RPL6P29-201ENST00000414863 865 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AC104651.2-201ENST00000447549 528 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 RPL35P6-201ENST00000490024 372 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 Y_RNA.719-201ENST00000517156 106 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AC007546.1-201ENST00000619452 559 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 LINC02035-201ENST00000610128 5476 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 RN7SKP185-201ENST00000362813 326 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 TMX2P1-201ENST00000436507 708 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AL359265.1-201ENST00000440296 795 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 OR52E6-202ENST00000379946 954 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 RNA5SP241-201ENST00000391326 114 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AL691449.1-201ENST00000426570 421 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 PSAT1P4-201ENST00000466500 526 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 RNA5SP360-201ENST00000516555 118 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 RNA5SP73-201ENST00000516744 108 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC090181.2-201ENST00000602975 672 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 MIR6500-201ENST00000622700 86 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 LINC00622-201ENST00000562811 1570 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 ISCUP1-201ENST00000454451 448 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 PPIAP15-201ENST00000479662 484 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 LCOR-201ENST00000286067 4542 ntBASIC4.32□□□□□ -1.72
VPS13AQ96RL7 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS13AQ96RL7 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 AC012213.2-201ENST00000562917 4597 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 RN7SKP74-201ENST00000362849 309 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 RGS17P1-201ENST00000423358 553 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 AC004980.3-201ENST00000447046 365 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 AC027369.5-201ENST00000533838 755 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 MIR5685-201ENST00000579080 79 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 OR6C71P-202ENST00000641886 1107 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 OR8B9P-202ENST00000642028 5216 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 DICER1-204ENST00000527414 6179 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 AC106871.1-201ENST00000568324 3102 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 EIF2S2P5-201ENST00000457635 968 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 RNA5SP246-201ENST00000458909 119 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 AC009120.7-201ENST00000623452 780 ntBASIC4.31□□□□□ -1.72
VPS13AQ96RL7 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms