Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.35□□□□□ -1.71
SKA3Q8IX90 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 SNORA70-201ENST00000384436 135 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 OR2X1P-201ENST00000421144 687 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 RBMY2QP-201ENST00000429799 1147 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 RAB28P3-201ENST00000448325 597 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AL356981.1-201ENST00000454879 684 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC090686.1-201ENST00000481577 749 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC004453.1-201ENST00000487895 408 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC073073.1-201ENST00000493920 463 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC140172.1-201ENST00000502928 141 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 MRPS33P2-201ENST00000507850 322 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 STMN1P2-201ENST00000508435 439 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SKA3Q8IX90 GLRXP2-201ENST00000555594 321 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC044860.2-201ENST00000561005 179 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC019206.1-201ENST00000621938 425 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 VN2R3P-201ENST00000422626 1412 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SKA3Q8IX90 AC093775.1-201ENST00000624154 1868 ntBASIC4.34□□□□□ -1.71
SKA3Q8IX90 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SKA3Q8IX90 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SKA3Q8IX90 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.34□□□□□ -1.72
SKA3Q8IX90 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
SKA3Q8IX90 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC087565.3-202ENST00000642085 1603 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 OR10J6P-201ENST00000289731 930 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 RNA5SP123-201ENST00000363244 119 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 MIR7-1-201ENST00000384871 110 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AL021331.1-201ENST00000402817 582 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AP002530.1-201ENST00000405705 684 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC013470.3-201ENST00000420252 1194 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 PTMAP6-201ENST00000439110 327 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 MTND6P18-201ENST00000439477 513 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 HMGB3P9-201ENST00000441799 583 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 HMGB3P13-201ENST00000511263 607 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC110775.1-201ENST00000513721 462 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AP002981.1-201ENST00000517692 975 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC104997.1-201ENST00000519761 717 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 RPL23AP53-201ENST00000521854 457 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC018442.3-201ENST00000523025 183 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 EIF4A2P5-201ENST00000529914 499 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 TVP23CP2-201ENST00000571473 623 ntBASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.33□□□□□ -1.72
SKA3Q8IX90 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 150.8 ms