Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 BTF3P13-201ENST00000513224 490 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 IGKV2D-10-201ENST00000520194 281 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 C1GALT1P3-201ENST00000522049 819 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 OR5AN2P-201ENST00000534535 896 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC068993.1-201ENST00000546724 589 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AL512310.9-201ENST00000553311 948 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 SETP1-201ENST00000556014 845 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC091042.1-201ENST00000579213 173 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AP000769.2-201ENST00000602344 396 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC008745.1-201ENST00000604064 271 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC019193.2-201ENST00000610012 634 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AP005131.7-201ENST00000610087 611 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC015712.7-201ENST00000615211 635 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC104307.1-201ENST00000616142 196 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AP003497.2-201ENST00000624220 967 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AP003400.3-201ENST00000624904 346 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 IRF5P1-201ENST00000504852 2164 ntBASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
PCDHGA1Q9Y5H4 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 RNA5SP428-201ENST00000365129 132 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 RNU6-532P-201ENST00000384318 107 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 RN7SKP114-201ENST00000410327 279 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 RN7SKP222-201ENST00000410651 315 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AC073264.2-201ENST00000448886 166 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 RN7SL459P-201ENST00000481078 302 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AP006289.1-201ENST00000538089 277 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 AL049844.2-201ENST00000604280 628 ntBASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5□□□□□ -1.61
PCDHGA1Q9Y5H4 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 SCARNA15-201ENST00000607520 4325 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 DDX18P3-201ENST00000404856 2007 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AL512430.2-201ENST00000406786 339 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC099336.2-201ENST00000422457 254 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 CR848007.2-201ENST00000424918 787 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 HMGN2P27-201ENST00000427352 270 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 NDUFA5P10-201ENST00000432147 357 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC092013.1-201ENST00000438795 332 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC112498.1-201ENST00000444401 332 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC02210-201ENST00000444561 288 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AL500527.1-201ENST00000448532 255 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC099560.2-201ENST00000457554 255 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 RNU7-27P-201ENST00000459281 62 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC006967.1-201ENST00000467608 589 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 OR7H2P-201ENST00000513483 306 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms