Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC9.14□□□□□ -0.95
SHROOM4Q9ULL8 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
SHROOM4Q9ULL8 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 AL731566.1-201ENST00000620490 1937 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 AC008758.3-201ENST00000507003 1829 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 PAPPA-AS1-201ENST00000445861 2450 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 MIR365B-201ENST00000362317 111 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 SNORA73.1-201ENST00000363107 205 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 MTND2P28-201ENST00000457540 1044 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 RPL7AP52-201ENST00000458096 790 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 IGKV3OR22-2-201ENST00000517943 313 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 MRPL49P2-201ENST00000521066 465 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 AC010424.2-201ENST00000607594 443 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 AL049794.2-201ENST00000616301 365 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 AC009643.2-201ENST00000603543 1448 ntBASIC9.13□□□□□ -0.95
SHROOM4Q9ULL8 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 SNORA11C-201ENST00000408532 129 ntBASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 RPS12P10-201ENST00000427031 377 ntBASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 RPL23AP24-201ENST00000458203 385 ntBASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 AC016559.2-201ENST00000510759 359 ntBASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 NDUFB4P12-201ENST00000513465 390 ntBASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 AC022726.1-201ENST00000587475 207 ntBASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 AC012409.3-201ENST00000611343 981 ntBASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC9.12□□□□□ -0.95
SHROOM4Q9ULL8 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AC011503.2-201ENST00000594230 1500 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AC007618.1-201ENST00000366455 732 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 RNU1-82P-201ENST00000390851 165 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 SNORA11F-201ENST00000408237 128 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 RNU6-362P-201ENST00000516736 90 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AC109635.6-201ENST00000525487 1113 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AC093249.4-201ENST00000564755 259 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 MIR4444-1-201ENST00000581696 74 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 MIR4444-2-201ENST00000584390 74 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 AP001029.2-203ENST00000589795 4910 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 MTND5P23-201ENST00000430812 1655 ntBASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
SHROOM4Q9ULL8 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 RN7SKP224-201ENST00000364140 325 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 RN7SKP280-201ENST00000364196 304 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 AC083799.1-201ENST00000366451 910 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 SEPT7P8-201ENST00000413308 775 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 QRSL1P2-201ENST00000418582 964 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 GAPDHP14-201ENST00000450472 937 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 MIR2116-201ENST00000517221 80 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 PYM1-205ENST00000547925 499 ntTSL 3 BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 AC100847.1-201ENST00000611316 481 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 UQCRC2P1-201ENST00000417777 1332 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 AP005432.1-201ENST00000580891 3485 ntBASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC9.1□□□□□ -0.95
SHROOM4Q9ULL8 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 RNU6ATAC5P-201ENST00000388104 126 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 OR51B3P-201ENST00000412287 913 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 TRIM60P17-201ENST00000415181 719 ntBASIC9.09□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms