Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MRO-208ENST00000588444 866 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA3P55318 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA3P55318 RPL27-207ENST00000590864 569 ntTSL 2 BASIC3.48□□□□□ -1.85
FOXA3P55318 BNIP3P32-201ENST00000600015 554 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 QTRT1P1-201ENST00000604344 1078 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 AL591926.8-201ENST00000616876 211 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 AC048341.3-201ENST00000619323 491 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 WWOX-217ENST00000620008 450 ntTSL 2 BASIC3.48□□□□□ -1.85
FOXA3P55318 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 MIR4727-201ENST00000622232 55 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 NXF4-202ENST00000416098 1465 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.47□□□□□ -1.85
FOXA3P55318 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.47□□□□□ -1.85
FOXA3P55318 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
FOXA3P55318 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
FOXA3P55318 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
FOXA3P55318 AC097504.1-201ENST00000515103 2415 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 AC067945.1-201ENST00000342609 618 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 RNA5SP183-201ENST00000362452 119 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 RNA5SP151-201ENST00000365632 117 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
FOXA3P55318 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 MIR513A2-201ENST00000385249 127 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 AL645733.1-201ENST00000402250 217 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 RPL23AP48-201ENST00000406913 488 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 RPL35AP24-201ENST00000413846 330 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC3.47□□□□□ -1.85
FOXA3P55318 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC3.47□□□□□ -1.85
FOXA3P55318 AF186996.5-201ENST00000418098 904 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 CENPIP1-201ENST00000425713 902 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 RPL7L1P9-201ENST00000431298 745 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 HMGB3P10-201ENST00000434734 572 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 RPS27AP15-201ENST00000447672 466 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 AC092647.2-201ENST00000452998 253 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 YRDCP3-201ENST00000456507 480 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
FOXA3P55318 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 AC007998.1-201ENST00000474156 672 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 AC116562.1-201ENST00000485355 781 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 RPL37P23-201ENST00000492641 294 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.47□□□□□ -1.85
FOXA3P55318 RNA5SP43-201ENST00000516559 110 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 RN7SKP5-201ENST00000517045 272 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 IGHV3-63-201ENST00000518422 341 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 AC022826.1-201ENST00000519383 805 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC3.47□□□□□ -1.85
FOXA3P55318 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC3.47□□□□□ -1.85
FOXA3P55318 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
FOXA3P55318 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC3.47□□□□□ -1.85
FOXA3P55318 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.47□□□□□ -1.85
FOXA3P55318 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 AC023762.1-201ENST00000603280 584 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 AC104695.2-201ENST00000605056 775 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA3P55318 AC099494.2-201ENST00000623371 978 ntBASIC3.47□□□□□ -1.85
FOXA3P55318 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA3P55318 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.85
FOXA3P55318 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC3.46□□□□□ -1.85
FOXA3P55318 CR383656.5-201ENST00000547616 1340 ntBASIC3.46□□□□□ -1.85
FOXA3P55318 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
FOXA3P55318 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA3P55318 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
FOXA3P55318 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 AC009804.1-201ENST00000400949 179 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AL078604.1-201ENST00000404609 466 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 RN7SKP126-201ENST00000411143 300 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA3P55318 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms