Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
BDNFP23560 AP006248.2-201ENST00000623309 592 ntBASIC5.61□□□□□ -1.51
BDNFP23560 AC083865.1-201ENST00000636634 831 ntBASIC5.61□□□□□ -1.51
BDNFP23560 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
BDNFP23560 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
BDNFP23560 AC007390.2-201ENST00000606229 3803 ntBASIC5.61□□□□□ -1.51
BDNFP23560 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
BDNFP23560 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
BDNFP23560 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.6□□□□□ -1.51
BDNFP23560 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 U8.4-201ENST00000363626 134 ntBASIC5.6□□□□□ -1.51
BDNFP23560 RNU1-87P-201ENST00000363727 170 ntBASIC5.6□□□□□ -1.51
BDNFP23560 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 SNORA70-201ENST00000384436 135 ntBASIC5.6□□□□□ -1.51
BDNFP23560 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.6□□□□□ -1.51
BDNFP23560 AL158827.1-201ENST00000416300 391 ntBASIC5.6□□□□□ -1.51
BDNFP23560 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC5.6□□□□□ -1.51
BDNFP23560 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.6□□□□□ -1.51
BDNFP23560 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 RPL5P30-201ENST00000465511 891 ntBASIC5.6□□□□□ -1.51
BDNFP23560 AC009127.1-201ENST00000467090 155 ntBASIC5.6□□□□□ -1.51
BDNFP23560 RPL23AP71-201ENST00000470966 469 ntBASIC5.6□□□□□ -1.51
BDNFP23560 SNRPCP2-201ENST00000504370 475 ntBASIC5.6□□□□□ -1.51
BDNFP23560 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC5.6□□□□□ -1.51
BDNFP23560 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 HMGN1P9-201ENST00000515212 298 ntBASIC5.6□□□□□ -1.51
BDNFP23560 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 RN7SKP82-201ENST00000516786 223 ntBASIC5.6□□□□□ -1.51
BDNFP23560 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
BDNFP23560 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 AC108738.1-201ENST00000603703 237 ntBASIC5.6□□□□□ -1.51
BDNFP23560 AC115621.1-201ENST00000604653 858 ntBASIC5.6□□□□□ -1.51
BDNFP23560 AL450270.1-201ENST00000606160 391 ntBASIC5.6□□□□□ -1.51
BDNFP23560 RPSAP73-201ENST00000614820 330 ntBASIC5.6□□□□□ -1.51
BDNFP23560 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
BDNFP23560 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.6□□□□□ -1.51
BDNFP23560 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
BDNFP23560 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
BDNFP23560 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.6□□□□□ -1.51
BDNFP23560 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 AL592182.3-201ENST00000642132 3304 ntBASIC5.59□□□□□ -1.51
BDNFP23560 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 MAPK10-349ENST00000641767 3661 ntBASIC5.59□□□□□ -1.51
BDNFP23560 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
BDNFP23560 VN2R3P-201ENST00000422626 1412 ntBASIC5.59□□□□□ -1.51
BDNFP23560 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.59□□□□□ -1.51
BDNFP23560 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
BDNFP23560 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.59□□□□□ -1.51
BDNFP23560 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.59□□□□□ -1.51
BDNFP23560 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.59□□□□□ -1.51
BDNFP23560 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.59□□□□□ -1.51
BDNFP23560 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 Z92846.1-201ENST00000456203 268 ntBASIC5.59□□□□□ -1.51
BDNFP23560 RPS4XP12-201ENST00000461747 709 ntBASIC5.59□□□□□ -1.51
BDNFP23560 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.59□□□□□ -1.51
BDNFP23560 RN7SL808P-201ENST00000496066 299 ntBASIC5.59□□□□□ -1.51
BDNFP23560 IGBP1P4-201ENST00000503202 879 ntBASIC5.59□□□□□ -1.51
BDNFP23560 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.59□□□□□ -1.51
BDNFP23560 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.59□□□□□ -1.51
BDNFP23560 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.59□□□□□ -1.51
BDNFP23560 VTA1P2-201ENST00000520205 911 ntBASIC5.59□□□□□ -1.51
BDNFP23560 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.59□□□□□ -1.51
BDNFP23560 AC087272.1-201ENST00000523624 533 ntBASIC5.59□□□□□ -1.51
BDNFP23560 AC022832.1-201ENST00000530718 645 ntBASIC5.59□□□□□ -1.51
BDNFP23560 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.59□□□□□ -1.51
BDNFP23560 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.59□□□□□ -1.51
BDNFP23560 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.59□□□□□ -1.51
BDNFP23560 AC095055.1-201ENST00000603472 1113 ntBASIC5.59□□□□□ -1.51
BDNFP23560 AL445222.1-201ENST00000607259 628 ntBASIC5.59□□□□□ -1.51
BDNFP23560 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 MIR6133-201ENST00000617057 108 ntBASIC5.59□□□□□ -1.51
BDNFP23560 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 AL163152.1-201ENST00000642001 374 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms