Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC013701.1-201ENST00000522657 465 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 HMGN2P6-201ENST00000551091 273 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 EIF1P5-201ENST00000585002 234 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 AC087763.1-201ENST00000603391 286 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 AL445222.1-201ENST00000607259 628 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 EIF3FP1-201ENST00000613970 806 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 CASC19-281ENST00000642118 1554 ntBASIC4.38□□□□□ -1.71
SKA3Q8IX90 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.38□□□□□ -1.71
SKA3Q8IX90 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SKA3Q8IX90 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 OR52B1P-201ENST00000316506 909 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 RNU6-670P-201ENST00000364312 104 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC083799.1-201ENST00000366451 910 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 SNORA68.2-201ENST00000391263 128 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 RNA5SP146-201ENST00000410743 123 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 RPL23AP27-201ENST00000415161 451 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 QRSL1P2-201ENST00000418582 964 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 CEACAMP7-201ENST00000444105 496 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 MRPL35P2-201ENST00000448009 511 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 MYO5BP2-201ENST00000449815 1277 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC093166.2-201ENST00000455969 1017 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 RN7SL808P-201ENST00000496066 299 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 SNORA70.17-201ENST00000516449 133 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC105031.1-201ENST00000518550 476 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC116553.2-201ENST00000564203 463 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC245128.3-201ENST00000594721 748 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 RPL26P30-202ENST00000602923 645 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC022387.2-201ENST00000604050 448 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC133552.5-201ENST00000604266 540 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC005377.1-201ENST00000605126 456 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC096553.1-201ENST00000605169 829 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 OR10AB1P-202ENST00000641219 1686 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 SALL4P2-201ENST00000423288 2910 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 AC027290.2-201ENST00000623210 18662 ntBASIC4.37□□□□□ -1.71
SKA3Q8IX90 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.37□□□□□ -1.71
SKA3Q8IX90 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SKA3Q8IX90 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 ECM1P2-201ENST00000503354 1577 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SKA3Q8IX90 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SKA3Q8IX90 AC139713.2-215ENST00000641428 5037 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SKA3Q8IX90 OR13C3-201ENST00000374781 1108 ntBASIC4.36□□□□□ -1.71
SKA3Q8IX90 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SKA3Q8IX90 Z97832.1-201ENST00000402490 328 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms