Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ASNSP1-201ENST00000518311 1939 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 RNA5SP223-201ENST00000365174 120 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 RNU6-925P-201ENST00000384629 104 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 MIR765-201ENST00000390226 114 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 EIF4A1P3-201ENST00000411521 244 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 MTND2P15-201ENST00000418575 892 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 COX6CP17-201ENST00000421389 185 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC012075.1-201ENST00000436549 580 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 MTCYBP12-201ENST00000440559 1134 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AL596266.1-201ENST00000448132 400 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AURKAPS1-201ENST00000451805 1212 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 PSMC1P13-201ENST00000458195 985 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 CCDC75P1-201ENST00000469247 791 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC073610.1-201ENST00000489971 396 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 RN7SL547P-201ENST00000490793 290 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 DUTP1-201ENST00000493631 470 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 OR5H3P-201ENST00000502817 919 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 PMS2P3-207ENST00000529061 717 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 SETP1-201ENST00000556014 845 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 OR1F2P-201ENST00000570470 933 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 BNIP3P22-201ENST00000593399 556 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC123786.2-201ENST00000603459 275 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC133644.2-201ENST00000608142 540 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC110792.4-201ENST00000609843 298 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC016957.2-201ENST00000616998 848 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AL049777.1-201ENST00000622740 518 ntBASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PDLIM3Q53GG5 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC079097.1-201ENST00000512187 1399 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RNA5SP394-201ENST00000364216 119 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL035419.1-201ENST00000397037 564 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RSL24D1P1-201ENST00000404972 493 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms