Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC112Q8NEF3 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
CCDC112Q8NEF3 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC112Q8NEF3 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC087190.4-201ENST00000574616 8334 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 OR56B2P-201ENST00000317102 954 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 LAP3P1-201ENST00000403648 294 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 RN7SKP273-201ENST00000411392 314 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 DDX39BP1-205ENST00000422507 192 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC069285.2-201ENST00000440210 275 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC010469.1-201ENST00000463864 576 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 RPS26P28-201ENST00000470806 348 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC090142.2-201ENST00000483263 416 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC138409.2-202ENST00000507274 458 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 OR4A46P-201ENST00000527255 933 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AP000676.2-201ENST00000529711 301 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC116651.1-201ENST00000609724 556 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 SMG1P6-201ENST00000532337 2930 ntBASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCDC112Q8NEF3 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 MIR448-201ENST00000362131 111 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AL357515.1-201ENST00000402967 542 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 RNA5SP345-201ENST00000410646 108 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 RPL7P57-201ENST00000423238 740 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC245047.2-201ENST00000441060 530 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 RPL5P30-201ENST00000465511 891 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC093270.2-201ENST00000486157 792 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 RN7SL97P-201ENST00000486780 299 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC109462.1-201ENST00000491087 368 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 NDUFA5P12-201ENST00000503796 343 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 FKBP1BP1-201ENST00000553366 325 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC015912.2-201ENST00000571053 181 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AL121834.1-201ENST00000572284 509 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 MIR4700-201ENST00000578311 74 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 HMGB2P1-201ENST00000591146 634 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 RPL7P50-201ENST00000600588 727 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC087763.1-201ENST00000603391 286 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AL359757.1-201ENST00000623176 255 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC131971.1-201ENST00000332881 1482 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 TLK1P1-201ENST00000456760 2440 ntBASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC112Q8NEF3 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 MTCO1P22-201ENST00000604619 1360 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 RPL23P2-201ENST00000320371 421 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 RNA5SP305-201ENST00000362665 119 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 SNORA17.1-201ENST00000362945 126 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 U8.4-201ENST00000363626 134 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 RPL12P3-201ENST00000440080 396 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC009127.1-201ENST00000467090 155 ntBASIC5.22□□□□□ -1.57
CCDC112Q8NEF3 AC006967.1-201ENST00000467608 589 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms