Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC079140.3-201ENST00000511111 550 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC091965.2-201ENST00000512324 613 ntBASIC5.62□□□□□ -1.51
MSX2P35548 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 MIR2117-201ENST00000516780 80 ntBASIC5.62□□□□□ -1.51
MSX2P35548 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AC131935.1-201ENST00000524621 333 ntBASIC5.62□□□□□ -1.51
MSX2P35548 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
MSX2P35548 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AC089984.3-201ENST00000552838 363 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AC116553.2-201ENST00000564203 463 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC087481.2-201ENST00000565492 330 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.62□□□□□ -1.51
MSX2P35548 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 WISP1-OT1-201ENST00000602893 642 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC090181.2-201ENST00000602975 672 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AP000403.1-201ENST00000603349 851 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC108747.1-201ENST00000609508 535 ntBASIC5.62□□□□□ -1.51
MSX2P35548 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AL035661.1-201ENST00000620459 1144 ntBASIC5.62□□□□□ -1.51
MSX2P35548 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 AC244258.1-201ENST00000637553 1071 ntBASIC5.62□□□□□ -1.51
MSX2P35548 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.62□□□□□ -1.51
MSX2P35548 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 AP000776.1-201ENST00000530032 1663 ntBASIC5.62□□□□□ -1.51
MSX2P35548 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
MSX2P35548 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.62□□□□□ -1.51
MSX2P35548 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.62□□□□□ -1.51
MSX2P35548 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
MSX2P35548 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
MSX2P35548 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 AC010894.1-201ENST00000313760 361 ntBASIC5.61□□□□□ -1.51
MSX2P35548 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 AC092634.1-201ENST00000366505 199 ntBASIC5.61□□□□□ -1.51
MSX2P35548 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC5.61□□□□□ -1.51
MSX2P35548 YWHAZP4-201ENST00000392459 708 ntBASIC5.61□□□□□ -1.51
MSX2P35548 VDAC2P1-201ENST00000399358 958 ntBASIC5.61□□□□□ -1.51
MSX2P35548 HMGB3P31-201ENST00000413333 595 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 OSTCP4-201ENST00000424397 449 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 GTF2IP7-202ENST00000436677 309 ntBASIC5.61□□□□□ -1.51
MSX2P35548 MTND3P1-201ENST00000441336 220 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AL356121.1-201ENST00000442911 156 ntBASIC5.61□□□□□ -1.51
MSX2P35548 CXCR2P1-202ENST00000443392 1074 ntBASIC5.61□□□□□ -1.51
MSX2P35548 ZNF619P1-201ENST00000446539 752 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AL157827.1-201ENST00000447622 132 ntBASIC5.61□□□□□ -1.51
MSX2P35548 KARSP1-201ENST00000451871 1752 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC5.61□□□□□ -1.51
MSX2P35548 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 NDUFA5P5-201ENST00000468361 342 ntBASIC5.61□□□□□ -1.51
MSX2P35548 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 PFN1P6-201ENST00000476786 399 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC107398.1-201ENST00000486904 505 ntBASIC5.61□□□□□ -1.51
MSX2P35548 RN7SL350P-201ENST00000492591 299 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC104971.1-201ENST00000495117 578 ntBASIC5.61□□□□□ -1.51
MSX2P35548 RPSAP51-201ENST00000497462 645 ntBASIC5.61□□□□□ -1.51
MSX2P35548 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.61□□□□□ -1.51
MSX2P35548 AC109458.1-201ENST00000508858 316 ntBASIC5.61□□□□□ -1.51
MSX2P35548 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 snoZ278.1-201ENST00000517059 112 ntBASIC5.61□□□□□ -1.51
MSX2P35548 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC5.61□□□□□ -1.51
MSX2P35548 AP000873.5-201ENST00000533906 236 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AP000619.3-201ENST00000535634 1127 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.61□□□□□ -1.51
MSX2P35548 UBE2NP1-201ENST00000545592 458 ntBASIC5.61□□□□□ -1.51
MSX2P35548 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.61□□□□□ -1.51
MSX2P35548 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 HIGD1AP17-201ENST00000554576 276 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms