Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC005332.5-201ENST00000591222 2919 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RPL12P20-201ENST00000475538 479 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC067959.1-201ENST00000604334 379 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC011626.1-201ENST00000604710 562 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL442639.1-201ENST00000625030 1899 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL022311.1-201ENST00000623726 19416 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 MAX-203ENST00000341653 330 ntTSL 2 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL359837.1-201ENST00000381357 287 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC108463.1-201ENST00000450258 347 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 MIR4298-201ENST00000584380 73 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC115286.1-201ENST00000604298 434 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC097063.1-201ENST00000426714 1797 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC104118.1-201ENST00000607625 1589 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 ATP5A1P1-201ENST00000454088 1321 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 STX3-208ENST00000641815 3236 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RN7SKP280-201ENST00000364196 304 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RN7SKP186-201ENST00000365371 303 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 MIR105-1-201ENST00000385222 81 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL161909.1-201ENST00000397390 712 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 OR51B3P-201ENST00000412287 913 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 BX119904.3-201ENST00000428194 957 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC138761.5-201ENST00000433967 325 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 BX842559.2-201ENST00000451418 605 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC090602.1-201ENST00000469695 252 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 OR52A4P-201ENST00000472867 958 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC084824.1-201ENST00000550917 1005 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 MIR3667-201ENST00000581025 74 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RPL26P30-202ENST00000602923 645 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC011944.2-201ENST00000624440 683 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC068446.1-201ENST00000556425 1549 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RN7SKP185-201ENST00000362813 326 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RNA5SP505-201ENST00000364748 108 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RNU1-82P-201ENST00000390851 165 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 MAST4-207ENST00000407621 559 ntTSL 2 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC119751.6-201ENST00000416712 186 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RPL23AP83-201ENST00000434984 473 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 NDUFA5P8-201ENST00000449019 346 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 IGHV5-78-201ENST00000450948 295 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 HMGN2P25-201ENST00000486956 268 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC012339.2-201ENST00000523996 453 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 RAD17P1-201ENST00000418130 2042 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 GVINP1-202ENST00000531871 7271 ntBASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC1.47□□□□□ -2.17
SYNE1Q8NF91 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms