Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC007342.9-201ENST00000623877 1385 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AL034549.2-201ENST00000618285 3373 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 MAPK10-338ENST00000641647 3362 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 OR9K1P-202ENST00000641111 3217 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 RNU6-398P-201ENST00000384143 109 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 SNORA11-201ENST00000408789 128 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC119751.6-201ENST00000416712 186 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AL590609.2-201ENST00000421430 368 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 RHOT1P3-201ENST00000436571 331 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 RPL34P20-201ENST00000442771 351 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 KNOP1P3-201ENST00000446933 426 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 RPL5P13-201ENST00000462840 709 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 OR7E128P-201ENST00000532736 1024 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AL390334.1-201ENST00000556395 450 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC009117.1-201ENST00000563948 554 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AL627230.1-201ENST00000613077 211 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AL591926.8-201ENST00000616876 211 ntBASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HDDC3Q8N4P3 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC5.15□□□□□ -1.58
HDDC3Q8N4P3 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 MIR7-1-201ENST00000384871 110 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 Z97832.1-201ENST00000402490 328 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 TAAR4P-201ENST00000454843 1039 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 EIF2S2P4-201ENST00000461070 984 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 RN7SL354P-201ENST00000469282 294 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC020779.1-201ENST00000478757 796 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 RPS12P31-201ENST00000491419 398 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC140172.1-201ENST00000502928 141 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 COX6B1P5-201ENST00000509843 249 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 RFPL4AP5-201ENST00000514977 504 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 SEPT10P1-201ENST00000517342 1162 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC021006.3-201ENST00000530771 192 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 TOMM20P2-201ENST00000540082 421 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC092868.3-201ENST00000560515 784 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC022387.2-201ENST00000604050 448 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC008745.1-201ENST00000604064 271 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AL162574.1-201ENST00000615702 950 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 AC002044.3-201ENST00000623314 541 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 TMEM30CP-203ENST00000637814 1035 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 MAPK10-328ENST00000641553 4009 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 IRF5P1-201ENST00000504852 2164 ntBASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.15□□□□□ -1.59
HDDC3Q8N4P3 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms