Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 SMG1P4-204ENST00000523028 4131 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 RNA5SP428-201ENST00000365129 132 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 OR1L6-202ENST00000373684 1044 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 SNORA66-201ENST00000384792 133 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 SNORA48.4-201ENST00000391089 134 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 RNA5SP241-201ENST00000391326 114 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AP002530.1-201ENST00000405705 684 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 PTP4A1P1-201ENST00000420539 515 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 GLUD1P9-201ENST00000420997 1173 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 MTND6P32-201ENST00000457611 483 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 RN7SL738P-201ENST00000470264 297 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 RN7SL205P-201ENST00000490174 284 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 DUX4L52-201ENST00000549363 777 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 RN7SL52P-201ENST00000584271 284 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC011626.1-201ENST00000604710 562 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 MEMO1P5-201ENST00000604810 406 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 uc_338.18-201ENST00000615451 175 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 RN7SL722P-201ENST00000617780 284 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 RN7SL565P-201ENST00000618246 284 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC015722.2-201ENST00000622210 551 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC132825.1-201ENST00000463573 2247 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC017002.4-201ENST00000604721 1525 ntBASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CCDC3Q9BQI4 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.96□□□□□ -1.61
CCDC3Q9BQI4 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.96□□□□□ -1.61
CCDC3Q9BQI4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.61
CCDC3Q9BQI4 AC019072.1-201ENST00000604535 1551 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 Y_RNA.110-201ENST00000363220 99 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 SNORA40.4-201ENST00000390971 128 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 Z97832.1-201ENST00000402490 328 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC009506.2-201ENST00000420635 840 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC007563.3-201ENST00000433233 371 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 RPS29P33-201ENST00000456717 146 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC090602.1-201ENST00000469695 252 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 IGLV2-34-201ENST00000490007 283 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC093890.1-201ENST00000502554 540 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 SEPT10P1-201ENST00000517342 1162 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 BNIP3P1-201ENST00000547295 580 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC063949.1-201ENST00000552900 865 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 ELOCP28-201ENST00000590044 317 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC006363.1-201ENST00000603806 463 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC005021.1-201ENST00000608730 355 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC103798.2-201ENST00000624292 632 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 AC019080.5-201ENST00000624891 757 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 DDX6P1-205ENST00000441966 1436 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.96□□□□□ -1.62
CCDC3Q9BQI4 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms