Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXA3O43365 AL606834.2-201ENST00000602954 668 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC124916.2-201ENST00000604416 224 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC015982.1-201ENST00000608113 465 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AP004247.3-201ENST00000608682 624 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC023509.5-201ENST00000617434 807 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA3O43365 AC022400.9-201ENST00000623633 273 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC095031.1-201ENST00000623685 672 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC034229.6-201ENST00000623704 224 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC120057.5-201ENST00000623840 154 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC021106.3-201ENST00000623925 531 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 SEPT14P19-203ENST00000633205 211 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC063952.1-203ENST00000634410 658 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC244258.1-201ENST00000637553 1071 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC099654.12-201ENST00000639868 649 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.21□□□□□ -1.58
HOXA3O43365 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
HOXA3O43365 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA3O43365 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 AL391261.1-201ENST00000555712 1479 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 AP000547.3-204ENST00000588548 2523 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 QRSL1P1-201ENST00000400977 1540 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HOXA3O43365 OR10J6P-201ENST00000289731 930 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 RN7SKP15-201ENST00000364742 309 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
HOXA3O43365 ATG4AP1-201ENST00000416893 538 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA3O43365 SLC44A3-AS1-205ENST00000424505 612 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AL389925.1-201ENST00000432257 728 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA3O43365 AC110602.1-201ENST00000437414 318 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA3O43365 UBE2V1P3-201ENST00000439651 417 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AMYP1-201ENST00000440059 1023 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HOXA3O43365 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA3O43365 EIF5AP4-201ENST00000441206 465 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 PMS2P9-201ENST00000441237 515 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AC016908.1-201ENST00000442571 1219 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 RPL5P7-201ENST00000444235 813 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXA3O43365 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA3O43365 RN7SL834P-201ENST00000461450 286 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 NDUFA5P5-201ENST00000468361 342 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA3O43365 MTAPP1-201ENST00000489154 819 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXA3O43365 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXA3O43365 RNA5SP135-201ENST00000517019 125 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 AC015871.2-201ENST00000603605 948 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AL109618.2-201ENST00000605527 211 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AC007684.1-201ENST00000609671 477 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AC138932.5-201ENST00000617759 563 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 AC131009.3-201ENST00000621809 287 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXA3O43365 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXA3O43365 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 OLMALINC-203ENST00000641087 3779 ntBASIC5.2□□□□□ -1.58
HOXA3O43365 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
HOXA3O43365 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXA3O43365 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXA3O43365 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXA3O43365 AC119674.1-204ENST00000641348 1343 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms