Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Gm45774-201ENSMUST00000211992 2665 ntBASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Gm8839-201ENSMUST00000121279 1645 ntBASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Gm26596-201ENSMUST00000180464 2655 ntBASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Gm22697-201ENSMUST00000175194 63 ntBASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Brf1Q8CFK2 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Gfra2-202ENSMUST00000227633 1480 ntBASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Gm26039-201ENSMUST00000158152 144 ntBASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC20.18■□□□□ 0.82
Brf1Q8CFK2 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Gm13216-201ENSMUST00000117145 591 ntBASIC20.17■□□□□ 0.82
Brf1Q8CFK2 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Brf1Q8CFK2 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Gm18101-201ENSMUST00000215769 548 ntBASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Brf1Q8CFK2 Gm45244-201ENSMUST00000211328 2200 ntBASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Gm21559-201ENSMUST00000220638 855 ntBASIC20.15■□□□□ 0.82
Brf1Q8CFK2 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Gm8587-201ENSMUST00000076538 843 ntBASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Brf1Q8CFK2 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
Brf1Q8CFK2 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Brf1Q8CFK2 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Brf1Q8CFK2 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Brf1Q8CFK2 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC20.14■□□□□ 0.81
Brf1Q8CFK2 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Brf1Q8CFK2 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Brf1Q8CFK2 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Brf1Q8CFK2 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms