Protein–RNA interactions for Protein: Q8C4J0

Ccdc60, Coiled-coil domain-containing protein 60, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc60Q8C4J0 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc60Q8C4J0 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc60Q8C4J0 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc60Q8C4J0 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Gfra2-202ENSMUST00000227633 1480 ntBASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc60Q8C4J0 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ccdc60Q8C4J0 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ccdc60Q8C4J0 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
Ccdc60Q8C4J0 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc60Q8C4J0 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc60Q8C4J0 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Gm18115-201ENSMUST00000221209 621 ntBASIC21.3■■□□□ 1
Ccdc60Q8C4J0 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ccdc60Q8C4J0 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Gm11336-201ENSMUST00000118168 334 ntBASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Gm44450-201ENSMUST00000199528 114 ntBASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ccdc60Q8C4J0 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms