Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.44■□□□□ 0.38
Ccdc40Q8BI79 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
Ccdc40Q8BI79 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc40Q8BI79 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Gm12085-201ENSMUST00000119263 940 ntBASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Gm9731-201ENSMUST00000209480 747 ntBASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc40Q8BI79 Tfap2a-209ENSMUST00000225180 1828 ntBASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Gm715-201ENSMUST00000117865 831 ntBASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Odf3b-204ENSMUST00000227834 930 ntBASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc40Q8BI79 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 AC156016.1-201ENSMUST00000227190 1035 ntBASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
Ccdc40Q8BI79 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc40Q8BI79 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ccdc40Q8BI79 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ccdc40Q8BI79 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc40Q8BI79 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc40Q8BI79 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc40Q8BI79 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc40Q8BI79 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc40Q8BI79 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms