Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Usp28Q5I043 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19■□□□□ 0.63
Usp28Q5I043 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Usp28Q5I043 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Usp28Q5I043 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Usp28Q5I043 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Usp28Q5I043 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.99■□□□□ 0.63
Usp28Q5I043 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.99■□□□□ 0.63
Usp28Q5I043 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.99■□□□□ 0.63
Usp28Q5I043 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.99■□□□□ 0.63
Usp28Q5I043 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
Usp28Q5I043 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.99■□□□□ 0.63
Usp28Q5I043 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Usp28Q5I043 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Usp28Q5I043 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.98■□□□□ 0.63
Usp28Q5I043 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Usp28Q5I043 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.98■□□□□ 0.63
Usp28Q5I043 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Usp28Q5I043 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.98■□□□□ 0.63
Usp28Q5I043 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp28Q5I043 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.97■□□□□ 0.63
Usp28Q5I043 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
Usp28Q5I043 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.97■□□□□ 0.63
Usp28Q5I043 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.97■□□□□ 0.63
Usp28Q5I043 Odf3b-204ENSMUST00000227834 930 ntBASIC18.97■□□□□ 0.63
Usp28Q5I043 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Usp28Q5I043 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
Usp28Q5I043 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp28Q5I043 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Usp28Q5I043 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Usp28Q5I043 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp28Q5I043 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Usp28Q5I043 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp28Q5I043 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp28Q5I043 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usp28Q5I043 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC18.95■□□□□ 0.62
Usp28Q5I043 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms