Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sdc4O35988 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Sdc4O35988 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Sdc4O35988 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sdc4O35988 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sdc4O35988 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sdc4O35988 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
Sdc4O35988 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.23■□□□□ 0.35
Sdc4O35988 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.23■□□□□ 0.35
Sdc4O35988 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sdc4O35988 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Sdc4O35988 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC17.22■□□□□ 0.35
Sdc4O35988 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.22■□□□□ 0.35
Sdc4O35988 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sdc4O35988 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.21■□□□□ 0.35
Sdc4O35988 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Sdc4O35988 Mir3081-201ENSMUST00000175305 84 ntBASIC17.21■□□□□ 0.35
Sdc4O35988 Gm18669-201ENSMUST00000216049 778 ntBASIC17.21■□□□□ 0.35
Sdc4O35988 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.21■□□□□ 0.35
Sdc4O35988 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Sdc4O35988 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sdc4O35988 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Sdc4O35988 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Sdc4O35988 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Sdc4O35988 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.2■□□□□ 0.34
Sdc4O35988 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.2■□□□□ 0.34
Sdc4O35988 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Sdc4O35988 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.2■□□□□ 0.34
Sdc4O35988 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC17.2■□□□□ 0.34
Sdc4O35988 Gm27357-201ENSMUST00000183754 135 ntBASIC17.2■□□□□ 0.34
Sdc4O35988 Gm29707-201ENSMUST00000196325 491 ntBASIC17.2■□□□□ 0.34
Sdc4O35988 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Sdc4O35988 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Sdc4O35988 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sdc4O35988 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Gm44450-201ENSMUST00000199528 114 ntBASIC17.19■□□□□ 0.34
Sdc4O35988 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Sdc4O35988 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Sdc4O35988 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sdc4O35988 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms